View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7771_low_6 (Length: 504)
Name: NF7771_low_6
Description: NF7771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7771_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 15301815 - 15302115
Alignment:
| Q |
1 |
gtgagtacatcataaataaattacatgttacatacaaatagatgaaacacacccaatacaataccatatagcaccactaacaacttaaatcacacaacta |
100 |
Q |
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|||||| |||||||||||||||||||||||| |||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15301815 |
gtgagtgcatcataaataaattacatgttacgtacaaataaatgaaacaaacccagcacaacaccatatagcaccactaacaacttaaatcacacaacta |
15301914 |
T |
|
| Q |
101 |
caactatatcgtcgtaggtagaaataggttaaaaatattcagcagtcaacaccaaacaaaatcactaacaactcaaatcactagaacattacgacattat |
200 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |
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| T |
15301915 |
caactatatcgt---aggtagaaataggttaaaaatactcagcagtcaacaccaaacaaaatcacaaacaactcctatcgttagaacattacgacattat |
15302011 |
T |
|
| Q |
201 |
tatgagtgacacaatattaatccacaaatcataataaatgcatcacagtacaatgctcacatactctacttgtatgcatgtgatactgaatacaataact |
300 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15302012 |
tatgagtgacacaatattaatacacaaatcataataaatgcatcacaatacaatgctcacatactctacttgtatgcatgtgatactgaattcaataact |
15302111 |
T |
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| Q |
301 |
aacg |
304 |
Q |
| |
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|||| |
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| T |
15302112 |
aacg |
15302115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 15294631 - 15294695
Alignment:
| Q |
4 |
agtacatcataaataaattacatgttacatacaaatagatgaaacacacccaatacaataccata |
68 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |
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| T |
15294631 |
agtacatcataaataaattacatgttacgtacaaatagatgaaacaaacccaatacaacaccata |
15294695 |
T |
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