View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7771_low_9 (Length: 394)
Name: NF7771_low_9
Description: NF7771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7771_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 5655563 - 5655343
Alignment:
| Q |
15 |
agcagagatacataacatttttggatgagggtttcaatttcgagaatgatgactggaggcattgagaatacatcaaagggtatgaaggagtttatttgga |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5655563 |
agcaaagatacataacatttttggatgagggtttcaatgccgagaatgaggattggaggcattgagaatacatcaaagggtatgaaggagtttatttgga |
5655464 |
T |
|
| Q |
115 |
tggtttgaggatttgaaaatatttagagagtttcagannnnnnnnatt--atgaaaaaagcgagtttggttttacctacggatttgatccgtagtgatag |
212 |
Q |
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| T |
5655463 |
tggtttgaggatttgaaaacatttagagagtttcagattttttttttttaatgaaaaaagcgagtttggttttacctacggatttgatccgtagtgatag |
5655364 |
T |
|
| Q |
213 |
agctgaatcagaacttacgaa |
233 |
Q |
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||||||||||||||||||||| |
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| T |
5655363 |
agctgaatcagaacttacgaa |
5655343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 232 - 379
Target Start/End: Complemental strand, 5655192 - 5655046
Alignment:
| Q |
232 |
aaaattttctgttactaaaagtcatgtcttttgtagtggggttggggaatcaacagttagaaaaaattgaaataaggggaccaaaaaactgaattttgaa |
331 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
5655192 |
aaaattttctgttactaaaagtcaagtcttttgtagtggggttggggaatcaatagttagaaaaa-ttgaaataaggggaccaaaaaactgaatttttaa |
5655094 |
T |
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| Q |
332 |
ataggggtaccaaacttcagaaaaatgaaaataggggcaaccaaagtg |
379 |
Q |
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| T |
5655093 |
ataagggtaccaaacttcagaaaaatgaaaatagggggaaccaaagtg |
5655046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 43606770 - 43606697
Alignment:
| Q |
295 |
aaattgaaataaggggaccaaaaaactgaattttgaaataggggtacc-aaacttcagaaaaatgaaaatagggg |
368 |
Q |
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| T |
43606770 |
aaattgaaataagggg-ccaaaaagttgaatttaaaaataggtgtaacgaaacttcagaagaatgaaaatagggg |
43606697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 40704924 - 40704820
Alignment:
| Q |
274 |
tggggaatcaacagttagaaaaaattgaaataaggggaccaaaaaactgaattttgaaataggggtacc-aaacttcagaaaaatgaaaataggggcaac |
372 |
Q |
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||||| ||||| ||||||||||| | |||||| ||||| ||||| ||||||||| ||||||||||||| |||||||| | |||| ||||| |||||| | |
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| T |
40704924 |
tgggggatcaaaagttagaaaaact-gaaatagggggatgaaaaa-ctgaattttaaaataggggtaccaaaacttcaaataaataaaaatgggggcacc |
40704827 |
T |
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| Q |
373 |
caaagtg |
379 |
Q |
| |
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|||||| |
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| T |
40704826 |
aaaagtg |
40704820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 10901057 - 10901121
Alignment:
| Q |
280 |
atcaacagttagaaaaaattgaaataaggggaccaaaaaactgaattttgaaataggggtaccaaa |
345 |
Q |
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||||| ||||||||||||||||||| ||||| |||| ||||||||||| ||||| ||||| |||| |
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| T |
10901057 |
atcaaaagttagaaaaaattgaaat-agggggccaagaaactgaatttaaaaatatgggtatcaaa |
10901121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 335
Target Start/End: Original strand, 40137561 - 40137664
Alignment:
| Q |
231 |
gaaaattttctgttactaaaagtcatgtcttttgtagtggggttggggaatcaacagttagaaaaaattgaaataaggggaccaaaaaactgaattttga |
330 |
Q |
| |
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|||||||| |||| ||||||| ||| || ||||||| |||| || ||||||| |||||||||||||| |||||| ||| |||||| | ||||||| | |
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| T |
40137561 |
gaaaatttactgtcactaaaattcaagttttttgtaacggggc-ggtgaatcaaaagttagaaaaaattaaaataaatggatcaaaaagcagaattttaa |
40137659 |
T |
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| Q |
331 |
aatag |
335 |
Q |
| |
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||||| |
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| T |
40137660 |
aatag |
40137664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 33094665 - 33094710
Alignment:
| Q |
290 |
agaaaaaattgaaataaggggaccaaaaaactgaattttgaaatag |
335 |
Q |
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||||||||||||| |||| |||||||| ||||||||||| |||||| |
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| T |
33094665 |
agaaaaaattgaattaagtggaccaaagaactgaattttaaaatag |
33094710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 368
Target Start/End: Original strand, 2897332 - 2897392
Alignment:
| Q |
308 |
gggaccaaaaaactgaattttgaaataggggtaccaaacttcagaaaaatgaaaatagggg |
368 |
Q |
| |
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|||||||||||||| ||||| ||||||||| || |||||||| |||||| ||| |||||| |
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| T |
2897332 |
gggaccaaaaaactaaatttcaaaataggggaacaaaacttcataaaaataaaagtagggg |
2897392 |
T |
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