View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7772_high_1 (Length: 527)
Name: NF7772_high_1
Description: NF7772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7772_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 159 - 418
Target Start/End: Complemental strand, 42469811 - 42469551
Alignment:
| Q |
159 |
gggaatggagtctaaacttttggataaattgcaaagagcacaaatatcatcatatcatat-atatactaaaaatacaaacaatttggtccctcacaacnn |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42469811 |
gggaatggagtctaaacttttggataaattgcaaagagcacaaatatcatcctatcatatcatatactaaaaatacaaacaatttggtccctcacaactt |
42469712 |
T |
|
| Q |
258 |
nnnnncacgacctgatttagttagttctgacaaaatataatattcaaaattcaaattaatttaggatagtttaatattgggacaaattagtccattggnn |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
42469711 |
tttttcacgacctgatttagttagttctgacaaaatataatattcaaaattcaaattaatttaggataatttaatatagggacaaattagtccattggaa |
42469612 |
T |
|
| Q |
358 |
nnnnnttctacccatgtcaatcttgtcatgcttagttggtccaaaacctagataaaaggag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42469611 |
aaatattctacccatgtcaatcttgtcatgcttagttggtccaaaacctagataaaaggag |
42469551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 42469950 - 42469844
Alignment:
| Q |
1 |
aggcacatgttacaataattaataagagaatacatacctccttttattgaaggagacttctaggtagatgccaaattcctgtagtgaagttgaaactgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42469950 |
aggcacatgttacaataattaataagagaatacatacctccttttattgaaggagacttctaggcagatgccaaattcctgtagtgaagttgaaactgac |
42469851 |
T |
|
| Q |
101 |
aagagta |
107 |
Q |
| |
|
||||||| |
|
|
| T |
42469850 |
aagagta |
42469844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University