View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7772_low_2 (Length: 424)
Name: NF7772_low_2
Description: NF7772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7772_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 241 - 408
Target Start/End: Complemental strand, 11036287 - 11036120
Alignment:
| Q |
241 |
acattaagaaaacactaaacaatcattaaactattaccaaacacaaacattacatttgtccgagcaaaactagactcagattccttcaacagcttttcaa |
340 |
Q |
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| T |
11036287 |
acattaagaaaacactaaacaatcattaaactattaccaaacacaaacattacatttgtccgagcaaaactagactcagattccttcaacagcttttcaa |
11036188 |
T |
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| Q |
341 |
attcaagccttatagatggaaaaaacgtagttgagggtggatacttcattaaaagtgacaagtcaagt |
408 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
11036187 |
attcaagccttatagatggaaaaaacgtagttgggagtggatacttcattaaaagtgacaagtgaagt |
11036120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 11036510 - 11036443
Alignment:
| Q |
1 |
aggataactcacagtctcacacaaaatggttaaaaagtataaaaccatagcaagagtaaaacagaaga |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11036510 |
aggataactcacagtctcacacaaaatggttaaaaagtataaaaccatagcaagagtaaaacagaaga |
11036443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 11036359 - 11036327
Alignment:
| Q |
212 |
ctttctccgattcaaaagatcaaatttctacat |
244 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
11036359 |
ctttctccaattcaaaagatcaaatttctacat |
11036327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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