View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7772_low_3 (Length: 355)
Name: NF7772_low_3
Description: NF7772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7772_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 24159981 - 24160305
Alignment:
| Q |
13 |
atactcctaaaatatcaggttttgtacgtcgaattctttctagggcttgtaaacttaaactatggtcatattttgtttaatcaagggattacttgatatt |
112 |
Q |
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| T |
24159981 |
atactcctaaaatatcaggttttgtacgtcgaattctttctagggcttgtaaacttaaactatggtcatattttgtttaatcaagggattacttgatatt |
24160080 |
T |
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| Q |
113 |
tgatgcatattctgggtgtccctccaaaggtaacaataatacggattaatataaattaaaattaatgaaaacaataacacagatctgtatgtctataggt |
212 |
Q |
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| T |
24160081 |
tgatgcatattctgggtgtccctccaaaggtaacaataatacggattaatataaattaaaattaatgaaaacaataacacagatctgtatgtctataggt |
24160180 |
T |
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| Q |
213 |
ttatatattctcttagcttaatgagtgtaggctcatctagggaaaatgctaaacttaatttatgtaacgtggagaatcaatgtttgaattttgacggtaa |
312 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24160181 |
ttatatattctcttagcttaatcagtgtaggctcatctagggaaaatgctaaacttaacttatgtaacgtggagaatcaatgtttgaattttgacggtaa |
24160280 |
T |
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| Q |
313 |
aagatgtccacatatgtagtatttg |
337 |
Q |
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||||||||||||||||||||||||| |
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| T |
24160281 |
aagatgtccacatatgtagtatttg |
24160305 |
T |
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