View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7772_low_4 (Length: 350)
Name: NF7772_low_4
Description: NF7772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7772_low_4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 264 - 350
Target Start/End: Original strand, 7955267 - 7955353
Alignment:
| Q |
264 |
gtaaattgagtacaacgtgtttactgtgattgttattaatattatttgcattaaaaaatatatatttagttagtatttatcgctccc |
350 |
Q |
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| T |
7955267 |
gtaaattgagtacaacgtgtttactgtaattgttattaatattatttgcattaaaaaatatatatttagttagtatttatcgctccc |
7955353 |
T |
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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 7955020 - 7955096
Alignment:
| Q |
20 |
gacagaacaacaccacatacacaggtaatgaatctagggttgaatgatttgggaattttgtcaatttagggtttttg |
96 |
Q |
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| T |
7955020 |
gacagaacaacaccacatacacaggtaatgaatctagggttgaatggtttgggaattttgtcaatttagggtttttg |
7955096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 209
Target Start/End: Original strand, 7955182 - 7955212
Alignment:
| Q |
179 |
gagatttttcttattgtttgttctagatagc |
209 |
Q |
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| T |
7955182 |
gagatttttcttattgtttgttctagatagc |
7955212 |
T |
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