View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7772_low_5 (Length: 340)
Name: NF7772_low_5
Description: NF7772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7772_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 134 - 323
Target Start/End: Complemental strand, 5531407 - 5531218
Alignment:
| Q |
134 |
caacgtgaaacttgatttttcaccataacttatctagnnnnnnncagatatgttaagggcacaaattctcatacttctaatagtttgtatctgaaccgca |
233 |
Q |
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| T |
5531407 |
caacgtgaaacttgatttttcaccataacttatctagtttttttcagatatgttaagggcacaaattctcatacttctaatagtttgtatctgaaccgca |
5531308 |
T |
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| Q |
234 |
caaattatccgaaaatacatacgtgaacatgcaaaacaatgtaattgaataattggataatgaatgcatacccaaacaaaactcgagggt |
323 |
Q |
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| T |
5531307 |
caaattatccgaaaatacatacgtgaacatgcaaaacaatgtaattgaataattggataatgaatgcatacccaaacaaaactcgagggt |
5531218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 5531562 - 5531485
Alignment:
| Q |
12 |
atgaacctcacatgcttcaacaaatttagatttttaatatttggtttaattcatccttataaaatcagtttgtaaaat |
89 |
Q |
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| T |
5531562 |
atgaacctcaaatgcttcaacaaatttaaatttttaatatttggtttaattcatccttataaaattaatttgtaaaat |
5531485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 101
Target Start/End: Complemental strand, 5531470 - 5531441
Alignment:
| Q |
72 |
aaaatcagtttgtaaaataaaaagtgtcac |
101 |
Q |
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| T |
5531470 |
aaaatcagtttgtaaaataaaaagtgtcac |
5531441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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