View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7773_high_5 (Length: 229)
Name: NF7773_high_5
Description: NF7773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7773_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 42540333 - 42540556
Alignment:
| Q |
6 |
accaatatcttctcaagacgacaagttgcacgaagagcaccgcaatgacgcgtttggcgttgtttacaaggttgagtagtttgcctcggaaacttcagct |
105 |
Q |
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| T |
42540333 |
accaatatcttctcaagacgacaagttgcacgaagagcaccgcaatgacgcgtttggcgttgtttacaaggttgagtagtttgcctcggaaacttcagct |
42540432 |
T |
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| Q |
106 |
tgtttgttccggtcaagaaagtgcactgagaatgtgaattcttgttcaatcctcctcctctcgtcgcaaataaacccttggatcaatcagattcagaaat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42540433 |
tgtttgttccggtcaagaaagtgcactgagaatgtgaattcttgttcaatcctcctcctctcgtcgcaaataaacccttggatcaatcagattcagaaat |
42540532 |
T |
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| Q |
206 |
gaaattaattaagtaagtgattaa |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
42540533 |
gaaattaattaagtaagtgattaa |
42540556 |
T |
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