View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7773_low_10 (Length: 315)

Name: NF7773_low_10
Description: NF7773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7773_low_10
NF7773_low_10
[»] chr7 (6 HSPs)
chr7 (1-209)||(47543398-47543606)
chr7 (92-209)||(4609652-4609769)
chr7 (54-209)||(10315043-10315198)
chr7 (54-209)||(31030341-31030496)
chr7 (83-201)||(17116404-17116522)
chr7 (85-182)||(38153904-38154001)
[»] chr1 (17 HSPs)
chr1 (1-206)||(32160044-32160248)
chr1 (45-211)||(15259370-15259536)
chr1 (63-164)||(26260768-26260869)
chr1 (78-182)||(27568382-27568486)
chr1 (52-182)||(27363725-27363855)
chr1 (70-179)||(44675097-44675206)
chr1 (112-206)||(38133069-38133163)
chr1 (105-147)||(9484879-9484921)
chr1 (83-187)||(12688172-12688276)
chr1 (105-173)||(25392345-25392413)
chr1 (89-179)||(4889452-4889542)
chr1 (95-169)||(27264588-27264662)
chr1 (1-30)||(1951924-1951953)
chr1 (89-182)||(6723718-6723811)
chr1 (129-182)||(10686232-10686285)
chr1 (83-188)||(48973644-48973749)
chr1 (58-122)||(36098596-36098660)
[»] chr6 (10 HSPs)
chr6 (1-209)||(32196736-32196944)
chr6 (50-209)||(7824105-7824264)
chr6 (84-206)||(11324442-11324564)
chr6 (79-212)||(17292763-17292896)
chr6 (63-182)||(18673363-18673482)
chr6 (109-167)||(9200938-9200996)
chr6 (63-182)||(5667346-5667465)
chr6 (83-201)||(34714895-34715013)
chr6 (89-182)||(2682761-2682854)
chr6 (105-178)||(7155422-7155495)
[»] chr3 (10 HSPs)
chr3 (1-209)||(4740971-4741176)
chr3 (84-181)||(14788867-14788964)
chr3 (45-209)||(13043321-13043485)
chr3 (45-209)||(13051398-13051562)
chr3 (70-182)||(20017410-20017522)
chr3 (63-179)||(47160990-47161106)
chr3 (70-182)||(6894192-6894304)
chr3 (89-182)||(25845647-25845740)
chr3 (110-143)||(33388601-33388634)
chr3 (83-135)||(6925997-6926049)
[»] chr5 (13 HSPs)
chr5 (1-147)||(16610602-16610748)
chr5 (44-209)||(31706387-31706552)
chr5 (50-177)||(29651767-29651894)
chr5 (57-209)||(704490-704642)
chr5 (109-209)||(30722538-30722638)
chr5 (57-209)||(27482646-27482798)
chr5 (64-154)||(29994645-29994735)
chr5 (138-182)||(22922506-22922550)
chr5 (64-170)||(18967864-18967970)
chr5 (133-182)||(22924159-22924208)
chr5 (58-182)||(19314979-19315103)
chr5 (83-135)||(21041995-21042047)
chr5 (138-170)||(22923149-22923181)
[»] chr2 (14 HSPs)
chr2 (3-143)||(8090506-8090646)
chr2 (45-209)||(40638766-40638930)
chr2 (64-179)||(31640241-31640356)
chr2 (45-209)||(20948080-20948244)
chr2 (85-182)||(27708189-27708286)
chr2 (253-302)||(43451281-43451330)
chr2 (84-182)||(44735977-44736075)
chr2 (83-179)||(27009200-27009296)
chr2 (52-125)||(9420722-9420795)
chr2 (63-176)||(45131107-45131220)
chr2 (92-179)||(9840768-9840855)
chr2 (76-178)||(33645830-33645932)
chr2 (105-170)||(21563423-21563488)
chr2 (58-179)||(30505717-30505838)
[»] chr4 (10 HSPs)
chr4 (64-200)||(52577965-52578101)
chr4 (89-188)||(9831377-9831476)
chr4 (89-209)||(30972395-30972515)
chr4 (83-182)||(22653286-22653385)
chr4 (89-182)||(11131194-11131287)
chr4 (63-135)||(19846574-19846646)
chr4 (89-173)||(43001717-43001801)
chr4 (92-182)||(8830949-8831039)
chr4 (82-179)||(25130441-25130538)
chr4 (105-173)||(48336968-48337036)
[»] chr8 (7 HSPs)
chr8 (83-182)||(8462514-8462613)
chr8 (105-170)||(5751992-5752057)
chr8 (83-173)||(33282823-33282913)
chr8 (113-211)||(39435484-39435582)
chr8 (89-182)||(37929106-37929199)
chr8 (89-149)||(33191210-33191270)
chr8 (63-123)||(38738483-38738543)
[»] scaffold0204 (1 HSPs)
scaffold0204 (105-173)||(24490-24558)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 7e-86; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 47543606 - 47543398
Alignment:
Q  1 tcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccacc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| |    
T  47543606 tcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaagcagaaaagaaactcttagccaatgcctaaaatggtaaacggactaagccatc 47543507  T
Q  101 actgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatcttt 200  Q
    ||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  47543506 acccatgataattgaagggaagagaactaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttgtcgaccacctggataaccgaacaatcttt 47543407  T
Q  201 gacattaaa 209  Q
    |||||||||    
T  47543406 gacattaaa 47543398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 4609652 - 4609769
Alignment:
Q  92 taagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgg 191  Q
    |||||||||||  ||| ||||||| ||||||||||| | |||||| ||||||||||||| |||||||| | ||||||||||||||||||||  |||| |     
T  4609652 taagccaccacccatggtaattgaggggaagagaaatatacttcgccttcaaccacgtataagcaagcaatttaatcttatcgaccacctgattaacaga 4609751  T
Q  192 gcaatctttgacattaaa 209  Q
    ||| ||||||| ||||||    
T  4609752 gcattctttgatattaaa 4609769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 10315198 - 10315043
Alignment:
Q  54 aagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaa 153  Q
    ||||||| ||||||| ||||| |||||  ||||| | ||||||||||||   || ||||||| |||||||||   | |||||  ||||||||| |||||     
T  10315198 aagaaacacttagcctatgcccaaaatagtaaacgggctaagccaccacccgtggtaattgaggggaagagaggaatacttcaccttcaaccatgtaaag 10315099  T
Q  154 gcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 209  Q
    ||||||||||||||||| || ||||||||  |||||| ||| ||||||||||||||    
T  10315098 gcaagcgacttaatcttgtctaccacctgattaaccgagcattctttgacattaaa 10315043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 31030341 - 31030496
Alignment:
Q  54 aagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaa 153  Q
    ||||||| ||||||| ||||| |||||  ||||| |  |||||||||||   || ||||||| |||||||||   | |||||  |||||||||||||||     
T  31030341 aagaaacacttagcctatgcccaaaatagtaaacgggttaagccaccacccgtggtaattgaggggaagagaggaatacttcaccttcaaccacgtaaag 31030440  T
Q  154 gcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 209  Q
    ||||||||||||||||| || ||||||||  |||||| ||| ||||||||||||||    
T  31030441 gcaagcgacttaatcttgtctaccacctgattaaccgagcattctttgacattaaa 31030496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 17116404 - 17116522
Alignment:
Q  83 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||||||||||||||||   ||||||| |||||||||||||| || | |||| |||||||||| |||| || || |||||||||||||| ||||| ||    
T  17116404 taaacagactaagccaccaaccatgataactgaagggaagagaagcatatttcgccttcaaccacataaatgcgagtgacttaatcttatcaaccacttg 17116503  T
Q  183 gataaccgggcaatctttg 201  Q
     || |||| ||||||||||    
T  17116504 tattaccgagcaatctttg 17116522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 38154001 - 38153904
Alignment:
Q  85 aacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||||||||||||||   ||| || || |||||||||| |  ||| |||  |||||||||| ||||||| || ||||||||| |||||||||||||    
T  38154001 aacagactaagccaccatctatggtagttaaagggaagagtaggaaatttcaccttcaaccacctaaaagcgagagacttaatcctatcgaccacctg 38153904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 32160248 - 32160044
Alignment:
Q  1 tcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccacc 100  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  32160248 tcaagaacaatatatacaaaagttacctaagagatcataaacaaaaa-cagaaaagaaactcttagccaatgcctaaaatggtaaacggactaagccacc 32160150  T
Q  101 actgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatcttt 200  Q
    ||  ||| |||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  32160149 accaatggtaattgaaggaaagagaaataaacttcgtcctcaaccacgtaaaagcaagcgacttaatcttatcgatcacctggataaccgagcaatcttt 32160050  T
Q  201 gacatt 206  Q
    ||||||    
T  32160049 gacatt 32160044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 15259536 - 15259370
Alignment:
Q  45 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 144  Q
    |||||||||||||||||||||||| ||||| |  ||| ||||| |||||||| |||||  ||| ||||||| ||||||||||| | |||||| |||||||    
T  15259536 aaaacagaaaagaaactcttagcctatgcccagtatggtaaacggactaagctaccacccatggtaattgaggggaagagaaatatacttcgccttcaac 15259437  T
Q  145 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaata 211  Q
    ||||||||||||||||| |||||||| |||||||||||  ||||||  || | ||||||||||||||    
T  15259436 cacgtaaaagcaagcgatttaatcttgtcgaccacctgattaaccgaacattatttgacattaaata 15259370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 26260869 - 26260768
Alignment:
Q  63 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 162  Q
    |||||||||||| || ||| ||||  ||||||||||||||  |||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||    
T  26260869 ttagccaatgcccaacatggtaaatggactaagccaccacccatgataattgaagggaagagaagcaaacttcgccttcaaccacgtaaaagcaagagac 26260770  T
Q  163 tt 164  Q
    ||    
T  26260769 tt 26260768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 27568486 - 27568382
Alignment:
Q  78 aatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgacc 177  Q
    ||||| |||||||||||||||||||  ||| ||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||| | || |||    
T  27568486 aatgacaaacagactaagccaccacccatggtaattgaagggaagagaaacaaattttgccttcaaccacgtaaaagcaagagacttaatcgtttctacc 27568387  T
Q  178 acctg 182  Q
    |||||    
T  27568386 acctg 27568382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 27363725 - 27363855
Alignment:
Q  52 aaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaa 151  Q
    ||||||||  ||||||| ||||| |||||| ||||| ||||||||||| ||  ||| ||||||| || |||||||    |||||| ||||||||||| ||    
T  27363725 aaaagaaaaccttagcctatgcccaaaatggtaaacggactaagccacaacccatggtaattgagggaaagagaagagtacttcgccttcaaccacgaaa 27363824  T
Q  152 aagcaagcgacttaatcttatcgaccacctg 182  Q
    | |||||||||||||||||||||||||||||    
T  27363825 aggcaagcgacttaatcttatcgaccacctg 27363855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 44675206 - 44675097
Alignment:
Q  70 atgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 169  Q
    ||||| || ||||||||| |||||||||||||   |||||||||||||||||| ||| |||| |||| |||||||||| | || ||||| | ||||||||    
T  44675206 atgcccaacatgataaacggactaagccaccaaccatgataattgaagggaagggaagcaaatttcgccttcaaccacatgaatgcaagtggcttaatct 44675107  T
Q  170 tatcgaccac 179  Q
    |||| |||||    
T  44675106 tatcaaccac 44675097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 38133069 - 38133163
Alignment:
Q  112 ttgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacatt 206  Q
    |||||||||||| |||||||  ||| ||||||||||||| ||||||  |||||||| ||||| | |||||| ||||||| |||| ||||| ||||    
T  38133069 ttgaagggaagaaaaacaaatctcgccttcaaccacgtataagcaaaagacttaatgttatctatcacctgaataaccgagcaaactttgtcatt 38133163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 9484921 - 9484879
Alignment:
Q  105 atgataattgaagggaagagaaacaaacttcgtcttcaaccac 147  Q
    ||||||||||||||||||||||||||| |||| ||||||||||    
T  9484921 atgataattgaagggaagagaaacaaatttcgccttcaaccac 9484879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 187
Target Start/End: Complemental strand, 12688276 - 12688172
Alignment:
Q  83 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    ||||| |||||||||||||   |||||| || ||||||||||    |||||||  |||||||||| ||||||  ||| ||||||||||||| ||||||||    
T  12688276 taaacggactaagccaccatccatgatagttaaagggaagagttggaaacttcaccttcaaccacttaaaagttagcaacttaatcttatccaccacctg 12688177  T
Q  183 gataa 187  Q
     ||||    
T  12688176 cataa 12688172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 25392345 - 25392413
Alignment:
Q  105 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 173  Q
    ||||||||||||||||| | ||  |||||||| |||||||||| || | || |||||||||||||||||    
T  25392345 atgataattgaagggaaaataagaaaacttcgccttcaaccacatacatgcgagcgacttaatcttatc 25392413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 4889542 - 4889452
Alignment:
Q  89 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 179  Q
    ||||||| ||||||  |||||| || ||||||||||||   ||||||| ||| |||||| | || |||||||||||||| ||||| |||||    
T  4889542 gactaagtcaccacccatgatagttaaagggaagagaagggaacttcgccttgaaccacatgaatgcaagcgacttaattttatcaaccac 4889452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 27264662 - 27264588
Alignment:
Q  95 gccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 169  Q
    ||||||||  ||| ||||||| ||||||||||    |||||| ||||||||||| ||| ||||||||||||||||    
T  27264662 gccaccacccatggtaattgaggggaagagaagagtacttcgccttcaaccacgaaaaggcaagcgacttaatct 27264588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 1951924 - 1951953
Alignment:
Q  1 tcaagaacaatatatacaaaagttgcctaa 30  Q
    ||||||||||||||||||||||||||||||    
T  1951924 tcaagaacaatatatacaaaagttgcctaa 1951953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 6723718 - 6723811
Alignment:
Q  89 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||||||||||   |||| ||||||| ||| ||| |  |||||||  |||||||||| ||||||  || ||||||||||| |||||||||||    
T  6723718 gactaagccaccatccatgaaaattgaaaggaggagtattaaacttcaccttcaaccacataaaagtgagggacttaatcttgtcgaccacctg 6723811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 10686232 - 10686285
Alignment:
Q  129 aaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||||| ||||||||||| ||| | ||| |||||||||||||| ||||||||    
T  10686232 aaacttcgccttcaaccacgcaaatgtaagggacttaatcttatccaccacctg 10686285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 48973749 - 48973644
Alignment:
Q  83 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||  |||||||||  ||| |||||| | ||||  | | ||||||| || || ||||||||    
T  48973749 taaacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagtcaacaacttaattttgtccaccacctg 48973650  T
Q  183 gataac 188  Q
     |||||    
T  48973649 tataac 48973644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 36098596 - 36098660
Alignment:
Q  58 aactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaag 122  Q
    ||||||||||| ||||| || ||| | ||| |||||||||||||   ||||||||||||||||||    
T  36098596 aactcttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaag 36098660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 32196736 - 32196944
Alignment:
Q  1 tcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccacc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| |    
T  32196736 tcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaagcagaaaagaaactcttagccaatgcctaaaatggtaaacggactaagccatc 32196835  T
Q  101 actgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatcttt 200  Q
    ||  ||| ||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||||||  |||||||||||||||||||  ||||||||    
T  32196836 acccatgttaattgaagggaagagaactaaacttcgtcttcaaccatgtaaaagtaagcgacttaatctggtcgaccacctggataaccgaacaatcttt 32196935  T
Q  201 gacattaaa 209  Q
    |||||||||    
T  32196936 gacattaaa 32196944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 7824105 - 7824264
Alignment:
Q  50 agaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgt 149  Q
    ||||||||||| ||||||| ||||| |||||| | ||| | ||||||||||||  ||| ||||||| |||||||||   | |||||| ||||||||||||    
T  7824105 agaaaagaaacacttagcctatgcccaaaatggtgaacgggctaagccaccacccatggtaattgaggggaagagaggaatacttcgccttcaaccacgt 7824204  T
Q  150 aaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 209  Q
    ||| ||||||||||||||||| |||||||||||  |||||| ||| ||||||||||||||    
T  7824205 aaaggcaagcgacttaatcttgtcgaccacctgattaaccgagcattctttgacattaaa 7824264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 11324564 - 11324442
Alignment:
Q  84 aaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctgg 183  Q
    |||| ||||||||||||||  |||||||||||||||||||||| |||| |||| |||||||||||||||||||||| |||||||||| || |||| |||     
T  11324564 aaacggactaagccaccacccatgataattgaagggaagagaagcaaatttcgccttcaaccacgtaaaagcaagcaacttaatcttgtctaccatctga 11324465  T
Q  184 ataaccgggcaatctttgacatt 206  Q
    | ||||| |||| ||||| ||||    
T  11324464 agaaccgagcaaactttgtcatt 11324442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 17292763 - 17292896
Alignment:
Q  79 atgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgacca 178  Q
    ||||||||| |||||||||| ||   |||||||||||||||||||||| |||| || |  ||||||||| | || || || ||||||||||||  |||||    
T  17292763 atgataaacggactaagccatcaaccatgataattgaagggaagagaagcaaatttggcgttcaaccacatgaatgctagagacttaatcttaatgacca 17292862  T
Q  179 cctggataaccgggcaatctttgacattaaatac 212  Q
    |||| |||| ||  || |||||| ||||||||||    
T  17292863 cctgcataatcgatcattctttgccattaaatac 17292896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 18673482 - 18673363
Alignment:
Q  63 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 162  Q
    ||||||||||||||||||  ||||| | |||||||||||   ||||||||||| |||||||   ||| | |||  |||||||||| |||||| ||| |||    
T  18673482 ttagccaatgcctaaaatagtaaacgggctaagccaccaaccatgataattgaggggaagactgacatatttctccttcaaccacataaaagtaagagac 18673383  T
Q  163 ttaatcttatcgaccacctg 182  Q
    ||||| ||||| ||||||||    
T  18673382 ttaattttatccaccacctg 18673363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 9200938 - 9200996
Alignment:
Q  109 taattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaat 167  Q
    ||||||| ||||||||||| | |||||| |||| |||||||||||||||||||||||||    
T  9200938 taattgaggggaagagaaatatacttcgccttctaccacgtaaaagcaagcgacttaat 9200996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 5667346 - 5667465
Alignment:
Q  63 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 162  Q
    |||||| |||||||||||  ||||| |||||| ||||||   |||||||||||||| |||||  | |||| |||||||||||||  | ||||  ||  ||    
T  5667346 ttagcctatgcctaaaatagtaaacggactaatccaccaaccatgataattgaaggaaagagttataaacctcgtcttcaaccatttgaaagtcagtaac 5667445  T
Q  163 ttaatcttatcgaccacctg 182  Q
    |||||| |||||||||||||    
T  5667446 ttaatcctatcgaccacctg 5667465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 34715013 - 34714895
Alignment:
Q  83 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||||||||||||||||   ||| ||||||| ||||||||||  ||| || |  ||||||||| ||||||  || |||||||||||||| ||||| ||    
T  34715013 taaacagactaagccaccaaccatggtaattgatgggaagagaagtaaattttgctttcaaccacctaaaagtgagagacttaatcttatcaaccacgtg 34714914  T
Q  183 gataaccgggcaatctttg 201  Q
     || |||| ||| ||||||    
T  34714913 tattaccgagcattctttg 34714895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 182
Target Start/End: Complemental strand, 2682854 - 2682761
Alignment:
Q  89 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||||||||||   |||| |||||||| ||| || |  ||| |||  |||||||||| |||||||||| ||||||||||| ||||| |||||    
T  2682854 gactaagccaccaaccatgacaattgaagagaatagtaggaaatttcaccttcaaccacctaaaagcaagggacttaatcttgtcgacaacctg 2682761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 7155495 - 7155422
Alignment:
Q  105 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgacca 178  Q
    ||||||||||||||| ||||||  ||| ||   ||||||||||||||||| |||  ||||||||||||| ||||    
T  7155495 atgataattgaagggtagagaagaaaatttttccttcaaccacgtaaaagtaagaaacttaatcttatcaacca 7155422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 9e-67; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 4741176 - 4740971
Alignment:
Q  1 tcaagaacaatatatacaaaagttgcct-aactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccac 99  Q
    ||||||||||||||||||| |||||||| ||| || |||    |||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||     
T  4741176 tcaagaacaatatatacaatagttgcctgaacagagcat----aaaaaacagaaaagaaactcttagcctatgcctaaaatggtaaacggactaagccat 4741081  T
Q  100 cactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctt 199  Q
    |||  ||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  4741080 cacccatggtaattgaagggaagagaaatatacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctagataaccgagcaatctt 4740981  T
Q  200 tgacattaaa 209  Q
    ||||||||||    
T  4740980 tgacattaaa 4740971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 14788964 - 14788867
Alignment:
Q  84 aaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacct 181  Q
    |||| ||||||||||||||| ||| |||||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |||||||    
T  14788964 aaactgactaagccaccactcatggtaattggagggaagagaaacaaatttcgccttcaaccacgtaaaagcaagggacttaatcttatctaccacct 14788867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 13043485 - 13043321
Alignment:
Q  45 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 144  Q
    |||| ||||||||||||||||||| ||||| |||||| | ||| |  |||||||||||  ||| || |||| ||||||||| | | |||||| |||||||    
T  13043485 aaaatagaaaagaaactcttagcctatgcccaaaatggtgaacgggttaagccaccacccatggtagttgaggggaagagagaaatacttcgccttcaac 13043386  T
Q  145 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 209  Q
    |||| ||| |||||||||||||| || |||||||||||  |||||| ||| ||||||||||||||    
T  13043385 cacgcaaaggcaagcgacttaattttgtcgaccacctgattaaccgagcattctttgacattaaa 13043321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 13051562 - 13051398
Alignment:
Q  45 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 144  Q
    |||| ||||||||||||||||||| ||||| |||||| | ||| |  |||||||||||  ||| || |||| ||||||||| | | |||||| |||||||    
T  13051562 aaaatagaaaagaaactcttagcctatgcccaaaatggtgaacgggttaagccaccacccatggtagttgaggggaagagagaaatacttcgccttcaac 13051463  T
Q  145 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 209  Q
    |||| ||| |||||||||||||| || |||||||||||  |||||| ||| ||||||||||||||    
T  13051462 cacgcaaaggcaagcgacttaattttgtcgaccacctgattaaccgagcattctttgacattaaa 13051398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 20017410 - 20017522
Alignment:
Q  70 atgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 169  Q
    ||||| |||||| | ||| ||| |||||||||   ||| || || |||||||| |||||||| ||| |||||||||||||| ||||||| ||||||||||    
T  20017410 atgcccaaaatggtgaacggacaaagccaccagccatggtagtttaagggaagtgaaacaaatttcttcttcaaccacgtataagcaagagacttaatct 20017509  T
Q  170 tatcgaccacctg 182  Q
    | || ||||||||    
T  20017510 tttctaccacctg 20017522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 47161106 - 47160990
Alignment:
Q  63 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 162  Q
    |||||||||||||||||  |||||| | |||||||||||   ||| |||||||| |||||||||  |||||||  |||||||||| ||||||  | | ||    
T  47161106 ttagccaatgcctaaaacaataaacggtctaagccaccaaccatggtaattgaatggaagagaaggaaacttcaccttcaaccacttaaaagttaacaac 47161007  T
Q  163 ttaatcttatcgaccac 179  Q
    |||||| |||| |||||    
T  47161006 ttaatcctatccaccac 47160990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 6894304 - 6894192
Alignment:
Q  70 atgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 169  Q
    |||||||||||  ||||| |||||| ||||||   ||||||||||||||||||||  | |||| ||| |||||||||  | ||||  ||  ||||||||     
T  6894304 atgcctaaaatagtaaacggactaatccaccaaccatgataattgaagggaagagttataaacctcgccttcaaccatttgaaagtcagtaacttaatcc 6894205  T
Q  170 tatcgaccacctg 182  Q
    |||||||||||||    
T  6894204 tatcgaccacctg 6894192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 182
Target Start/End: Complemental strand, 25845740 - 25845647
Alignment:
Q  89 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||||||||||   ||| || || ||||| ||||||  |||||||| |||||||||| | ||||  ||||||||||| ||||| ||||||||    
T  25845740 gactaagccaccaaccatggtagttcaagggcagagaaggaaacttcgccttcaaccacatgaaagagagcgacttaattttatcaaccacctg 25845647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 33388601 - 33388634
Alignment:
Q  110 aattgaagggaagagaaacaaacttcgtcttcaa 143  Q
    ||||||||||||||||| ||||||||||||||||    
T  33388601 aattgaagggaagagaagcaaacttcgtcttcaa 33388634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 6926049 - 6925997
Alignment:
Q  83 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttc 135  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||  |||||||||    
T  6926049 taaacggactaagccaccacccatgataattaaagggaagagttacaaacttc 6925997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 16610748 - 16610602
Alignment:
Q  1 tcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccacc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  16610748 tcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaaacagaaaagaaactattagccaatgcctaaaatggtaaacggactaagccacc 16610649  T
Q  101 actgatgataattgaagggaagagaaacaaacttcgtcttcaaccac 147  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||    
T  16610648 acccatgataattgaagggaagagaaacaaacttcgtcttcaaccac 16610602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 44 - 209
Target Start/End: Original strand, 31706387 - 31706552
Alignment:
Q  44 aaaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaa 143  Q
    ||||||||||||||||||||||||| ||||| || ||| ||||| ||||||||||||||  ||| ||||||| ||||||||||| | |||||| ||| ||    
T  31706387 aaaaacagaaaagaaactcttagcctatgcccaatatggtaaacggactaagccaccacccatggtaattgaggggaagagaaatatacttcgcctttaa 31706486  T
Q  144 ccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 209  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||||    
T  31706487 ccacgtaaaagcaagcgacttaatcttgtcgaccacctggataaccaaacaatctttgacattaaa 31706552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 29651767 - 29651894
Alignment:
Q  50 agaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgt 149  Q
    ||||||||||  ||||||| ||||| || ||| ||||| ||||||||||||||  ||||||||||| | |||||||||   ||||||  ||||||||||     
T  29651767 agaaaagaaaaccttagcctatgcccaacatggtaaacggactaagccaccacccatgataattgaggagaagagaaaagtacttcgcattcaaccacga 29651866  T
Q  150 aaaagcaagcgacttaatcttatcgacc 177  Q
    |||||||||| |||||||||| ||||||    
T  29651867 aaaagcaagcaacttaatcttgtcgacc 29651894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 704490 - 704642
Alignment:
Q  57 aaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagca 156  Q
    ||||| |||||||||||| |  ||| ||||| ||||||| ||||||  |||||||||||| |||||| || ||||||| | ||||||||| | ||||| |    
T  704490 aaacttttagccaatgcccagtatggtaaacggactaagtcaccacccatgataattgaatggaagaaaagcaaactttgccttcaaccaagcaaaagta 704589  T
Q  157 agcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 209  Q
    ||  ||||||||||||| | |||| | |||||||  |||||||| || |||||    
T  704590 agaaacttaatcttatctatcacccgaataaccgaacaatctttaacgttaaa 704642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 30722538 - 30722638
Alignment:
Q  109 taattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaa 208  Q
    ||||||| |||||||||   | |||||| ||||||||||||||| |||||||||||||| || || ||||||||  |||||| ||| |||||||||||||    
T  30722538 taattgaggggaagagaggaatacttcgccttcaaccacgtaaaggcaagcgacttaatattgtctaccacctgattaaccgagcattctttgacattaa 30722637  T
Q  209 a 209  Q
    |    
T  30722638 a 30722638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 27482646 - 27482798
Alignment:
Q  57 aaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagca 156  Q
    |||||||||||| ||||| || ||| | ||| |||||||||||||   |||||||||||||||||| | |||  | |||  ||||||||||  ||| ||     
T  27482646 aaactcttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaagtgtaacgtatttcaccttcaaccaccaaaaggcg 27482745  T
Q  157 agcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 209  Q
    || |||||||||||||| |||||||| || |||| ||| |||||  |||||||    
T  27482746 agggacttaatcttatcaaccacctgaattaccgagcattctttatcattaaa 27482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 29994735 - 29994645
Alignment:
Q  64 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaag 154  Q
    ||||||||||||||||   ||||| || ||||||||||   ||||||||||||||||||| ||  |||||||  |||||||||| ||||||    
T  29994735 tagccaatgcctaaaacagtaaacggattaagccaccaaccatgataattgaagggaagaaaaggaaacttcaccttcaaccacttaaaag 29994645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 22922506 - 22922550
Alignment:
Q  138 cttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||    
T  22922506 cttcaaccacgtaaaagcaagagacttaatcttctctaccacctg 22922550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 18967970 - 18967864
Alignment:
Q  64 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgact 163  Q
    ||||||||||| |  || |||||  |||||||||| ||   ||||| ||| || ||||||||| |||| |||| |||||||||| |||||| ||| ||||    
T  18967970 tagccaatgcccagcataataaatggactaagccatcatccatgatcattaaatggaagagaagcaaatttcgccttcaaccacataaaagaaagtgact 18967871  T
Q  164 taatctt 170  Q
    |||||||    
T  18967870 taatctt 18967864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 22924159 - 22924208
Alignment:
Q  133 ttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||| |||||||||||||||| |||| ||||||||||| || ||||||||    
T  22924159 ttcgccttcaaccacgtaaaaccaagagacttaatcttctctaccacctg 22924208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 19314979 - 19315103
Alignment:
Q  58 aactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaa 157  Q
    |||| |||||| |||||||  ||| ||||| | |||||||||||   |||||||||  ||||||   || |||| |||| |||||||||| |||| |  |    
T  19314979 aactattagcctatgcctagcatggtaaacgggctaagccaccaaccatgataattccagggaaataaagcaaatttcgccttcaaccacataaatgtga 19315078  T
Q  158 gcgacttaatcttatcgaccacctg 182  Q
    | |||||||||||||| ||||||||    
T  19315079 gtgacttaatcttatcaaccacctg 19315103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 21042047 - 21041995
Alignment:
Q  83 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttc 135  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||  |||||||||    
T  21042047 taaacggactaagccaccacccatgataattaaagggaagagttacaaacttc 21041995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 22923149 - 22923181
Alignment:
Q  138 cttcaaccacgtaaaagcaagcgacttaatctt 170  Q
    ||||||||||||||||||||| |||||||||||    
T  22923149 cttcaaccacgtaaaagcaagagacttaatctt 22923181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 8090646 - 8090506
Alignment:
Q  3 aagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccac 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  8090646 aagaacaatatatacaaaagttgcctaacagatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatggtaaacggactaagccaccac 8090547  T
Q  103 tgatgataattgaagggaagagaaacaaacttcgtcttcaa 143  Q
      ||||||||||||||||||||||| ||||| |||||||||    
T  8090546 ccatgataattgaagggaagagaaataaactccgtcttcaa 8090506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 209
Target Start/End: Original strand, 40638766 - 40638930
Alignment:
Q  45 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 144  Q
    |||||| |||||||||| |||||| ||| | |||||  ||||| ||||||||||||||  ||| |||||||||||||||||| || |||||  | |||||    
T  40638766 aaaacataaaagaaacttttagcctatgtccaaaatcgtaaacggactaagccaccacccatggtaattgaagggaagagaagcatacttcaacatcaac 40638865  T
Q  145 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 209  Q
    |||||||| | |||||| |||||||| |||||||||||  |||| | ||| ||||||||||||||    
T  40638866 cacgtaaaggtaagcgatttaatcttgtcgaccacctgattaactgagcactctttgacattaaa 40638930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 31640356 - 31640241
Alignment:
Q  64 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgact 163  Q
    ||||| ||||||| |||  ||||| |||||||||||||   ||| ||||||| |||||||||| |||| |||| ||||||||||||||||||||| ||||    
T  31640356 tagcctatgcctataattgtaaacggactaagccaccatccatggtaattgaggggaagagaagcaaatttcgccttcaaccacgtaaaagcaagtgact 31640257  T
Q  164 taatcttatcgaccac 179  Q
    |||||||||| |||||    
T  31640256 taatcttatctaccac 31640241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 20948244 - 20948080
Alignment:
Q  45 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 144  Q
    |||| ||||||||||  ||||||| |  || || ||| ||||| ||||||||||||||  ||| ||||||| | ||||||||  | |||||| |||||||    
T  20948244 aaaaaagaaaagaaaaccttagcctacacccaacatggtaaacggactaagccaccacccatggtaattgaggcgaagagaagaatacttcgccttcaac 20948145  T
Q  145 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 209  Q
    |||| ||| ||||||||||||||||| | |||||||||   ||||| ||| |||||| |||||||    
T  20948144 cacgaaaaggcaagcgacttaatcttgttgaccacctgagaaaccgagcagtctttggcattaaa 20948080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 27708189 - 27708286
Alignment:
Q  85 aacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||| ||||||||||   ||||  |||||||||||||| | |||| |||| ||| |||||||||||||| ||||||||||||||||| ||||||||    
T  27708189 aacagattaagccaccaaccatgaagattgaagggaagagtagcaaatttcgcctttaaccacgtaaaagcgagcgacttaatcttatcaaccacctg 27708286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 43451330 - 43451281
Alignment:
Q  253 gtgtgcatttgaattagtggaagcgtgtggtacgcacttgtaggatgatg 302  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43451330 gtgtgcatttgaattagtggaagcgtgtggtgcgcacttgtaggatgatg 43451281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 44735977 - 44736075
Alignment:
Q  84 aaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||||||||||||| |   |||| ||||||||||||||| |  |||||||| |||||||||| ||||||  || ||||||||||| |||||||||||    
T  44735977 aaacagactaagccactaaccatgaaaattgaagggaagagtattaaacttcgccttcaaccacataaaagtgagggacttaatcttgtcgaccacctg 44736075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 27009296 - 27009200
Alignment:
Q  83 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 179  Q
    ||||| |||||||||||||   ||| ||||||||||||||||||  ||| |||| |||||| ||| ||||||| || |||||||||||||| |||||    
T  27009296 taaacggactaagccaccaaccatggtaattgaagggaagagaagtaaatttcgccttcaatcacctaaaagcgagagacttaatcttatcaaccac 27009200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 9420722 - 9420795
Alignment:
Q  52 aaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagaga 125  Q
    ||||||||  ||||||| |||||||||||  ||||| | ||||||||||||  ||||||||||| |||||||||    
T  9420722 aaaagaaaaccttagcctatgcctaaaatagtaaacgggctaagccaccacccatgataattgaggggaagaga 9420795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 45131107 - 45131220
Alignment:
Q  63 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 162  Q
    |||||||||||| |  ||| ||||  ||||||||||||||  |||||||||||||||||||||| || | |||  |||||||||| | ||||   |||||    
T  45131107 ttagccaatgcccagcatggtaaatggactaagccaccacccatgataattgaagggaagagaagcatatttccccttcaaccacatgaaagtttgcgac 45131206  T
Q  163 ttaatcttatcgac 176  Q
     ||||||| |||||    
T  45131207 ataatcttgtcgac 45131220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 9840855 - 9840768
Alignment:
Q  92 taagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 179  Q
    ||||||||||   |||||||||||| ||||||| | |||| || | |||||| ||| ||||||| ||||| ||||||||||| |||||    
T  9840855 taagccaccaaccatgataattgaatggaagagtagcaaattttgccttcaatcacataaaagcgagcgatttaatcttatcaaccac 9840768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 33645830 - 33645932
Alignment:
Q  76 aaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcga 175  Q
    |||||| | |||||||||| ||||||   ||| |||||||| ||||||| | |||| ||   |||||||||| |||| || ||||||||||||||||| |    
T  33645830 aaaatggtgaacagactaacccaccaaccatggtaattgaaaggaagagtagcaaatttttccttcaaccacctaaatgcgagcgacttaatcttatcaa 33645929  T
Q  176 cca 178  Q
    |||    
T  33645930 cca 33645932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 21563488 - 21563423
Alignment:
Q  105 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatctt 170  Q
    ||||||||| || | |||||||||||| || | | ||||||||||||||| ||| |||||||||||    
T  21563488 atgataatttaatgaaagagaaacaaattttgccctcaaccacgtaaaagaaagtgacttaatctt 21563423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 30505838 - 30505717
Alignment:
Q  58 aactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaa 157  Q
    |||| |||||| ||||| || ||| |||||||||||| ||||||   |||||||||||||||||| |||  ||| |||  ||||||| |  |||| || |    
T  30505838 aactattagcctatgcccaacatggtaaacagactaaaccaccaaccatgataattgaagggaagtgaagaaaatttctccttcaactagataaatgcga 30505739  T
Q  158 gcgacttaatcttatcgaccac 179  Q
    |  ||||||||||||| |||||    
T  30505738 gaaacttaatcttatcaaccac 30505717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 52578101 - 52577965
Alignment:
Q  64 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgact 163  Q
    ||||| ||||||| ||||  ||||  ||||||||||||   ||||||||||||||||||||| |||||||||  ||||||||||||||||||||| ||||    
T  52578101 tagcctatgcctagaatggcaaacgcactaagccaccaaccatgataattgaagggaagagatacaaacttcaccttcaaccacgtaaaagcaagggact 52578002  T
Q  164 taatcttatcgaccacctggataaccgggcaatcttt 200  Q
    |||||||||| | |||||| | ||||| |||| ||||    
T  52578001 taatcttatctatcacctgaagaaccgagcaaacttt 52577965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 9831476 - 9831377
Alignment:
Q  89 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 188  Q
    |||||||||||||   |||||||||||||||||| | ||| || |||| |||||||||| |||||||||| ||||| |||||||| |||||||| |||||    
T  9831476 gactaagccaccagccatgataattgaagggaagtgtaacgaatttcgccttcaaccacctaaaagcaagagacttgatcttatccaccacctgaataac 9831377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 30972395 - 30972515
Alignment:
Q  89 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 188  Q
    |||||||||||||   |||||| |||||||||||||||  ||| |||| ||||| |||| | ||||  ||||||||||| ||||| |||||||| ||||     
T  30972395 gactaagccaccagccatgatagttgaagggaagagaaggaaatttcgccttcagccacatgaaagtcagcgacttaattttatcaaccacctgcataat 30972494  T
Q  189 cgggcaatctttgacattaaa 209  Q
     | ||| |||||| |||||||    
T  30972495 tgagcactctttgccattaaa 30972515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 22653385 - 22653286
Alignment:
Q  83 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||||||||||||||||   |||||||||||||| ||   || |||| |||| |||||||||| |||| |  ||||| ||||||||||| ||||||||    
T  22653385 taaacagactaagccaccaaccatgataattgaaggtaatgtaagcaaatttcgccttcaaccacataaatgtgagcgatttaatcttatcaaccacctg 22653286  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 11131194 - 11131287
Alignment:
Q  89 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||||||||||   ||||||||| ||||||||||  |||||||||  ||||||||||  |||||  ||| |||||||| |||| ||||||||    
T  11131194 gactaagccaccaaccatgataattaaagggaagagtgacaaacttcaccttcaaccactgaaaagatagcaacttaatcctatctaccacctg 11131287  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 19846646 - 19846574
Alignment:
Q  63 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttc 135  Q
    |||| ||||||| || ||| ||||| |||||| |||||||  |||||||||||||||||||||| || |||||    
T  19846646 ttagacaatgcccaacatggtaaacggactaatccaccacccatgataattgaagggaagagaagcatacttc 19846574  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 43001801 - 43001717
Alignment:
Q  89 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 173  Q
    ||||||||||||||  ||||||||||||  |||||| |  |||||||| |||||||||| |||| |  || ||||||||||||||    
T  43001801 gactaagccaccacatatgataattgaaatgaagagtagtaaacttcgccttcaaccacataaatgttagtgacttaatcttatc 43001717  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 8830949 - 8831039
Alignment:
Q  92 taagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||||||| | ||| ||||||||||||||| ||| ||| |||  ||||||| || ||||||  ||||||||||| || || ||||||||    
T  8830949 taagccaccagtcatggtaattgaagggaagataaagaaatttctccttcaactacataaaagtgagcgacttaattttgtcaaccacctg 8831039  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 25130441 - 25130538
Alignment:
Q  82 ataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 179  Q
    |||||| |||||||||||||   |||||| |||| || ||||| | |||| |||  |||||||||| | ||||| || ||||| ||||||||||||||    
T  25130441 ataaacggactaagccaccaaccatgatagttgagggaaagagtagcaaatttctccttcaaccacatgaaagcgagggacttgatcttatcgaccac 25130538  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 48337036 - 48336968
Alignment:
Q  105 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 173  Q
    ||||| ||||||||||||||||  ||| |||| |||||||||| | ||||  ||||||||||| |||||    
T  48337036 atgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagcgacttaattttatc 48336968  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 8462514 - 8462613
Alignment:
Q  83 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||||||||||||||||   |||||||||||||||||||||| |||| |||| |||||||||| | || |  || |||||||||||||| ||||||||    
T  8462514 taaacagactaagccaccaaccatgataattgaagggaagagaagcaaatttcgccttcaaccacatgaatgtgagtgacttaatcttatcaaccacctg 8462613  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 5752057 - 5751992
Alignment:
Q  105 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatctt 170  Q
    ||||||||||| |||||||||   | |||||| |||||||||||||||  ||||||||||||||||    
T  5752057 atgataattgaggggaagagaggaatacttcgccttcaaccacgtaaagacaagcgacttaatctt 5751992  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 33282913 - 33282823
Alignment:
Q  83 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 173  Q
    ||||| |||||||||||||   |||||||||||  || |||||| |||| ||   |||||||||| |||||| |||||||||||| |||||    
T  33282913 taaacggactaagccaccaaccatgataattgagagggagagaagcaaatttttccttcaaccacctaaaagtaagcgacttaattttatc 33282823  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 39435484 - 39435582
Alignment:
Q  113 tgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaata 211  Q
    |||| ||||||||| |||| |||| |||||||||| | ||  | || |||||||||||||| |||||||| | ||||| ||| |||||| |||| ||||    
T  39435484 tgaaaggaagagaagcaaatttcgccttcaaccacatgaactcgagtgacttaatcttatcaaccacctgcaaaaccgagcattctttgtcattgaata 39435582  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 182
Target Start/End: Complemental strand, 37929199 - 37929106
Alignment:
Q  89 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 182  Q
    |||||||||||||   |||||| || |||||||||| |  ||| |||  |||||||||| |||| || || ||||||||| |||||||||||||    
T  37929199 gactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctg 37929106  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 33191210 - 33191270
Alignment:
Q  89 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgt 149  Q
    |||||||||||||   |||||||||||||||||||| | |||| |||  ||||||||||||    
T  33191210 gactaagccaccaaccatgataattgaagggaagagtatcaaatttcaacttcaaccacgt 33191270  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 38738543 - 38738483
Alignment:
Q  63 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaaga 123  Q
    ||||||||||||||||||  ||||| | |||||||||||   ||||||||||| |||||||    
T  38738543 ttagccaatgcctaaaatagtaaacgggctaagccaccaaccatgataattgaggggaaga 38738483  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 24558 - 24490
Alignment:
Q  105 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 173  Q
    ||||| ||||||||||||||||  ||| |||| |||||||||| | ||||  ||||||||||| |||||    
T  24558 atgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagcgacttaattttatc 24490  T

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