View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7773_low_3 (Length: 479)
Name: NF7773_low_3
Description: NF7773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7773_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 51863415 - 51863029
Alignment:
| Q |
18 |
atcacaatcgaaacagctcctccgagtataaacggtcttcttctcccaaatcgactcgtacaccgatcactcaaatgcccaaccaagggttgaacaagaa |
117 |
Q |
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| T |
51863415 |
atcacaatcgaaacagctcctccgagtataaacggtcttcttctcccaaatcgactcgtacaccgatcactcaaatgcccaaccaagggttgaacaagaa |
51863316 |
T |
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| Q |
118 |
gcccagaaagaggcccacataaccatataatgctggcccacgcgtgtgggattccgagctgttgcacatatggtgttagaagagagagttgcaaagccca |
217 |
Q |
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| T |
51863315 |
gcccagaaagaggcccacataaccatataatgctggcccacgcgtgtgggattccgagctgttgcacatatggtgttagaagagagagttgcaaagccca |
51863216 |
T |
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| Q |
218 |
tccgaattgaatcccgccggcgacggatgctactcggagaagctttgtgagtgggacccggtctttgggacgtggtttgattcgaaccgttgaagatgga |
317 |
Q |
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| T |
51863215 |
tccgaattgaatcccgccggcgacggatgctactcggagaagctttgtgagtaggacccggtctttgggacgtggtttgattcgaaccgttgaagatgga |
51863116 |
T |
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| Q |
318 |
gagggtcgaggtttagaccggtggtgttgacggtgagtttcgggattcgccattgtgtggtgtagtggcttggaagattgtattgtg |
404 |
Q |
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| T |
51863115 |
gagggtcgaggtttagaccggtggtgttgacggtgagtttcgggattcgccattgtgtggtgtagtggcttggaagattgtattgtg |
51863029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 51863005 - 51862969
Alignment:
| Q |
425 |
atcactacattgagaacaagaaatttgtgaccgtttc |
461 |
Q |
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| T |
51863005 |
atcactacattgagaacaagaaatttgtgaccgtttc |
51862969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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