View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7773_low_7 (Length: 328)
Name: NF7773_low_7
Description: NF7773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7773_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 8117762 - 8117585
Alignment:
| Q |
1 |
aagaacaaaagtgtgcttgaatttcaattgaattttgttatgtatgctggcaactttgtttactactattgctgcttagttgccagcaactataaccttt |
100 |
Q |
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| T |
8117762 |
aagaacaaaagtgtgcttgaatttcaattgaattttgttatgtctgctggcaactt-gtttactactattgctgcttagttgccagcaactataaccttt |
8117664 |
T |
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| Q |
101 |
tctggggagacatataccaaatggataagaaaaagagagtcttatttggcaacgtttgcaattttgacacgatttggac |
179 |
Q |
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| T |
8117663 |
tctggggagacatataccaaatggataagaaaaagagagtcttatttggcaacgtttgcaattttgacacgatttggac |
8117585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 8117519 - 8117436
Alignment:
| Q |
245 |
gttagaccatagtattagtaaacacaaacttaatttatgtatttttgtgttagacttgtaaacgctacttttgacatttttcac |
328 |
Q |
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| T |
8117519 |
gttagaccatagtattagtaaacacaaacttaatttatgtatttttgtgttagacttgtaaacgctacttttgacatttttcac |
8117436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 8108693 - 8108627
Alignment:
| Q |
102 |
ctggggagacatataccaaatggataagaaaaagagagtcttatttggcaacgtttgcaattttgac |
168 |
Q |
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| T |
8108693 |
ctggggagatgtataccaaatggataagaaaaagagagtcttatttggcaacttttgcaattttgac |
8108627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 8106667 - 8106591
Alignment:
| Q |
64 |
tactattgctgcttagttgccagcaactataaccttttctggggagacatataccaaatggataagaaaaagagagt |
140 |
Q |
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| T |
8106667 |
tactgttgttgcttagttgccagcaagtgtaaccattcctggggagatagataccaaattgatatgaaaaagagagt |
8106591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 8106704 - 8106668
Alignment:
| Q |
3 |
gaacaaaagtgtgcttgaatttcaattgaattttgtt |
39 |
Q |
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| T |
8106704 |
gaacaaaagtgtgcttgaatttcaattggattttgtt |
8106668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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