View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7773_low_9 (Length: 323)
Name: NF7773_low_9
Description: NF7773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7773_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 5682701 - 5682401
Alignment:
| Q |
1 |
catatctatatagactatggtatcacaaaagctgggagaaaaggcagtgacagaactaaaaagaaagaaattgaaaaa-gggaatagacatatagtcttg |
99 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
5682701 |
catatctatatagactatggtatcacaaaagctgagagaaaaggcagtgacagaactaaaaagaaagaaattgaaaaaagggaatagacata--gtcttg |
5682604 |
T |
|
| Q |
100 |
tgttttgaatagcaaaaggagataaaagacactgtggtgtggaatagagggtaggggctcacgagatgttgcaacaaaagaagccaaaaaccaatcaagt |
199 |
Q |
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| T |
5682603 |
tgttttgaatagcaaaaggagataaaa-acactg--gtgtggaatagagggtaggggctcacgagatgttgcaacaaaagaagccaaaaaccaatcaagt |
5682507 |
T |
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| Q |
200 |
ttaaaggacaatatagctattgaaatcattcaaatttagctttatatatatcttattcagaatataactccacatactatgaaagctagttcagaaaatg |
299 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5682506 |
ttaaaggacaatatagctattgaaatcatgcaaatttagctttatatatatcttattcagaatataactccacatactatgaaagctagttcagaaaatg |
5682407 |
T |
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| Q |
300 |
ccttct |
305 |
Q |
| |
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|||||| |
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| T |
5682406 |
ccttct |
5682401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 5692740 - 5692656
Alignment:
| Q |
152 |
aggggctcacgagatgttgcaacaaaagaagccaaaaaccaatcaagtttaaaggacaatatagctattgaaatcattcaaatttag |
238 |
Q |
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| T |
5692740 |
aggggctcacgagatgaaacaacaaatgaagccaaaaaccaatcaagtctaaaggaca--atagctattaaaatcatacaattttag |
5692656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 5692820 - 5692771
Alignment:
| Q |
21 |
tatcacaaaagctgggagaaaaggcagtgacagaactaaaaagaaagaaa |
70 |
Q |
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|||||||||||||| |||||||||| ||||||| |||||||||||||| |
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| T |
5692820 |
tatcacaaaagctgatcgaaaaggcagggacagaattaaaaagaaagaaa |
5692771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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