View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7774_high_1 (Length: 449)
Name: NF7774_high_1
Description: NF7774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7774_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 314 - 431
Target Start/End: Original strand, 16743241 - 16743358
Alignment:
| Q |
314 |
aagcaaaaatcgttttaataagaaagcacatgaggttctccaacctttacaacacaagtttagactaagcatcatagtggagaagaactatccactatat |
413 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16743241 |
aagcaaaaatcgtattaataagaaaacacatgaggttctccaacctttacaacacaagtttagactaagcatcatagtggagaagaactatccactatat |
16743340 |
T |
|
| Q |
414 |
agtttaataaataaacct |
431 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
16743341 |
agtttaacaaataaacct |
16743358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 16742932 - 16743010
Alignment:
| Q |
15 |
tttggtgttcattgcccttataaatcttacttcaaaggtatggcacctcccatatgggttgtaccaccttttcagtgga |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16742932 |
tttggtgttcattgcccttataaatcttacttcaaaggtatggcacctcccatatgggttgtaccaccttttcagtgga |
16743010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 16724535 - 16724609
Alignment:
| Q |
15 |
tttggtgttcattgcccttataaatcttacttcaaaggtatggcacctcccatatgggttgtaccaccttttcag |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16724535 |
tttggtgttcattgcccttataaatcttacttcaaaggtatggcacctcccatatgggttgtaccaccttttcag |
16724609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 16724703 - 16724767
Alignment:
| Q |
183 |
catatttgtttgttatgctcataaaagtcttgttatgttgacaaaggataattaaaatcattgcc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16724703 |
catatttgtttgttatgctcataaaagtcttgttatgttgacaaaggaccattaaaatcattgcc |
16724767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 16743110 - 16743172
Alignment:
| Q |
183 |
catatttgtttgttatgctcataaaagtcttgttatgttgacaaaggataattaaaatcattg |
245 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16743110 |
catatttgttttttatgctcataaaagtcttgttatgttgacaaaggatcattaaaatcattg |
16743172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 16724879 - 16724942
Alignment:
| Q |
343 |
atgaggttctccaacctttacaacacaagtttagactaagcatcatagtggagaagaactatccact |
409 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
16724879 |
atgaggttctccatcctttacgacacaagtctagactaagcatcatagt---gaagaactatccact |
16724942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University