View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7774_high_2 (Length: 384)
Name: NF7774_high_2
Description: NF7774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7774_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 6476340 - 6475989
Alignment:
| Q |
18 |
cgaacaatctccaccgattctcgaaaaattccagaatcttctccctataattaatcacttcaatcataaatcaaatttcaacaaattaatcaaaacagaa |
117 |
Q |
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| T |
6476340 |
cgaacaatctccaccaattctcgaaaaattccagaatcttctccctataatcaatcacttcaatcataaatcaaatttcaacaaattaatcaaaacagaa |
6476241 |
T |
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| Q |
118 |
ttgaattaaacaggattaaaattatataccagttttttcagtagaataaacagcgagaagagtgattgagtcgctcgaatgaacgatgttagtaagcgcc |
217 |
Q |
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| T |
6476240 |
ttgaataaaataggattaaaattatataccagttttttcagtagaataaacagcgagaagagtgattgagtcgcttgaatgaacgatgttagtaagcgcc |
6476141 |
T |
|
| Q |
218 |
catgctaatgcggtgtttgagatcaccttctccgctttaaccgccacaagaaccttattcgaagatacagcggcggtggtgctgtgccttgcgcttttgg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6476140 |
catgctaatgcggtgtttgagatcaccttctccgctttaaccgccacgagaaccttattcgaagatacagcggcggtggtgctgtgccttgcgcttttgg |
6476041 |
T |
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| Q |
318 |
aaccaatgatttcatctcttagcattgcgtttggatcgtgtgagcgtgtgtg |
369 |
Q |
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| T |
6476040 |
aaccaatgatttcatctcttagcattgcgtttggatcgtgtgagtgtgtgtg |
6475989 |
T |
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