View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7774_low_1 (Length: 464)
Name: NF7774_low_1
Description: NF7774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7774_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 43599371 - 43599804
Alignment:
| Q |
18 |
tgatggtagcatcaagatctatagcaacaaaagcaaagtattattaaaagcttgattatgttaacttatttgcagactaaacatattatatacttattat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43599371 |
tgatggtagcatcaagatctatagcaacaaaagcaaagtattattaaaagcttaattatgttaacttatttgcagactaaacatattatatacttattat |
43599470 |
T |
|
| Q |
118 |
gtagagactatttagaaaaacaactgcacaaaatagaaatgagttacaatagtataactacaacaatgtttaaaagaaaccactgttttaaaagaatgaa |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43599471 |
gtagagactatttagaaaaacaactgcacaaaatagaaatgagttacaatagtataactacaacaatgtttaaaagaaaccactgtttt-aaagaatgaa |
43599569 |
T |
|
| Q |
218 |
ttaaaacgatttataatagaattatagctcttgtctaaggtttttgttaactaatgttcaaatcactactatttaattcatctttcaaagattttaacat |
317 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43599570 |
ttaaaacgatttataatagaaatatagctcttgtctaaggtttttgttaactaatgttcaaatcactactatttaattcatctttcaaagattttaacat |
43599669 |
T |
|
| Q |
318 |
ctactaaatggtttttatttatctaataagtaactttaacatcaaccatagtctcttagtcgcatctgacctatnnnnnnncctttc--aaaaaacacaa |
415 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
43599670 |
ctaccaaatggtttttatttatctaataagtaactttaacatcaaccataatctcttagtcgcatctgacctataaaaaaacctttcaaaaaaaacacaa |
43599769 |
T |
|
| Q |
416 |
atcatttttcataaatcataatctaccaaatggtt |
450 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
43599770 |
atcatttttcataaatcataatctaccaaatggtt |
43599804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 23704830 - 23705086
Alignment:
| Q |
18 |
tgatggtagcatcaagatctatagcaacaaaagcaaagtatt-attaaaagcttgattatgttaacttatttgcagactaaacatattatatacttatta |
116 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| || || ||||||||||||||| |||||||||| |||||||||||||| ||||||||||| ||| |
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|
| T |
23704830 |
tgatggcagcatcaagatctataacaacaaaagcaatgtttttattaaaagcttgattttgttaacttagttgcagactaaacaaattatatacttgtta |
23704929 |
T |
|
| Q |
117 |
tgtagagactatttagaaaaacaactgcacaaaatagaaatgagttacaatagtataactacaacaatgtttaaaagaaaccactgttttaaaagaatga |
216 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||||||||| |||||| || ||||||||| || |||||||||||||| ||||||||||||| |
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| T |
23704930 |
tgtaaagactatttagaaaaacaactacacaaaatagaaatgaattacaaccgtgcaactacaac---gtataaaagaaaccactagtttaaaagaatga |
23705026 |
T |
|
| Q |
217 |
attaaaacgatttataatagaattatagctcttgtctaaggtttttgttaactaatgttc |
276 |
Q |
| |
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||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
23705027 |
attaaaacgatttataatagacttatagcccttgtataaggtttttgttaactaatgttc |
23705086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 453
Target Start/End: Original strand, 23705398 - 23705443
Alignment:
| Q |
410 |
acacaaatcattttt--cataaatcataatctaccaaatggttctt |
453 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
23705398 |
acacaaatcatttttttcatcaatcataatctaccaaatggttctt |
23705443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 14833447 - 14833864
Alignment:
| Q |
18 |
tgatggtagcatcaagatctatagcaacaaaagcaaagtattattaaaagcttgattatgttaacttatttgcagactaaacatattatatacttattat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || |
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|
| T |
14833447 |
tgatggtagcatcaagatctatagcaacaaaagcaaagtattattaaaagcatgattatgttaac-----------------atattatatacttatcat |
14833529 |
T |
|
| Q |
118 |
gtagagactatttagaaaaacaactgcacaaaatagaaatgagttacaatagtataactacaacaatgtttaaaagaaaccactgttttaaaagaatgaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14833530 |
gtagagactatttagaaaaacaactgcacaaaatagaaatgagttacaatagtataactacaacaatgtttaaaagaaaccactgttttaaa-gaatgaa |
14833628 |
T |
|
| Q |
218 |
ttaaaacgatttataatagaattatagctcttgtctaaggtttttgttaactaatgttcaaatcactactatttaattcatctttcaaagattttaacat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14833629 |
ttaaaacgatttataatagaattatagcccttgtctaaggtttttgttaactaatgttcaaatcactactatttaattcatctttcaaagattttaacat |
14833728 |
T |
|
| Q |
318 |
ctactaaatggtttttatttatctaataagtaactttaacatcaaccatagtctcttagtcgcatctgacctatnnnnnnncctttcaaaaaacacaaat |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14833729 |
ctaccaaatggtttttatttatctaataagtaactttaacatcaaccataatctcttagtcgcatctgacctataaaaaaacctttcaaaaaacacaaat |
14833828 |
T |
|
| Q |
418 |
catttttcataaatcataatctaccaaatggttctt |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
14833829 |
catttttcataaatcataatctaccaaatggttctt |
14833864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 40821461 - 40821367
Alignment:
| Q |
18 |
tgatggtagcatcaagatctatagcaacaaaagcaaagtattattaaaagcttgattatgttaacttatttgcagactaaacatattatatactt |
112 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||| ||| || ||||||| ||||||||||| |
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| T |
40821461 |
tgatggcagcatcaagatctatagcaacaaaagcaatgttttatttaaagcttgattttgttaacttagttgtaggctaaacaaattatatactt |
40821367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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