View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7774_low_10 (Length: 277)
Name: NF7774_low_10
Description: NF7774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7774_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 127 - 261
Target Start/End: Complemental strand, 43180808 - 43180674
Alignment:
| Q |
127 |
gtaaatggaacctaattctccatattccaccaccgtcatcgtagaaaagttcaaaagcgctaccaccagccccagcgccgtcttcgccggctccatcatc |
226 |
Q |
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| T |
43180808 |
gtaaatggaacctaattctccatattccaccaccgtcatcgtagaaaagttcaaaagcgctaccaccagccccagcgccgtcttcgccggctccatcatc |
43180709 |
T |
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| Q |
227 |
accggctccacgaagaacgatgacagggttgaaag |
261 |
Q |
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| T |
43180708 |
accggctctacgaagaacgatgacagggttgaaag |
43180674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43180934 - 43180859
Alignment:
| Q |
1 |
aacccagaaatcaatgtgttgttgttgttatgtatgttgccgtaagcatctttttcagttcctcttctccctccct |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43180934 |
aacccagaaatcaatgtgttgttgttgttatgtatgttgccgtaagcatctttttcagttcctcttctccctccct |
43180859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 24097936 - 24098040
Alignment:
| Q |
157 |
caccgtcatcgtagaaaagttcaaaagcgctaccaccagccccagcgccgtcttcgccggctccatcatcaccggctccacgaagaacgatgacagggtt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
24097936 |
caccgtcatcgtagaaaagttcaaaagcgctaccaccagcaccagcgccgtcttctccgactccatcatcaccggctccacgaagaacgatgacaggatt |
24098035 |
T |
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| Q |
257 |
gaaag |
261 |
Q |
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||||| |
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| T |
24098036 |
gaaag |
24098040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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