View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7774_low_3 (Length: 441)
Name: NF7774_low_3
Description: NF7774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7774_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 52946 - 53366
Alignment:
| Q |
18 |
atgatgacaatacactctacatgggttaggcctagtttcctcctctctttagccaaattcattctcaacatcgatagatcgggttcatcacaattgaatt |
117 |
Q |
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| T |
52946 |
atgatgacaatacactctacatgggttaggcctagtttcctcctctctttagccaaattcattctcaacatcgatagatcgggttcatcacaattgaatt |
53045 |
T |
|
| Q |
118 |
aaccacaatgtgcatttcatgacattcatcaaggcttgtagaaaagtttctagaaaatatgaaaaacgataagaatcaaaaagtgattcgaatcatgcct |
217 |
Q |
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| T |
53046 |
aaccacaatgtgcatttcatgacattcatcaaggcttgtagaaaagtttctagaaaatatgaaaaacgataagaatcaaaaagtgattcgaatcatgcct |
53145 |
T |
|
| Q |
218 |
gtcctgactcattggacacatcctaaatctcatgaaggtcactctatcattaatttaaaggacttaaattcatcaagcaattcatgcatattttcacaca |
317 |
Q |
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| T |
53146 |
gtcctaactcattggacacatcctaaatctcatgaaggtcactctatcattaatttaaaggacttaaattcatcaagcaattcatgcatattttcacaca |
53245 |
T |
|
| Q |
318 |
aaaccttaccaactcgatttcatattatgatgcattgtctaggacttcattctatgactttcttctaatttagaaatttaaattattcttaaaccaccaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53246 |
aaaccttaccaactcgatttcatattatgatgcattgtctaggacttcattctatgactttcttctaatttagaaatttaaattattcttaaaccaccaa |
53345 |
T |
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| Q |
418 |
ctactcactattttggttcat |
438 |
Q |
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||||||||||||||||||||| |
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| T |
53346 |
ctactcactattttggttcat |
53366 |
T |
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