View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7774_low_5 (Length: 339)
Name: NF7774_low_5
Description: NF7774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7774_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 44532568 - 44532869
Alignment:
| Q |
13 |
ataccgggtcttgcgttatggtaggtaaagattttaatatttcctaaacgtagtggcaatatttatgctaaggcaacattgttgtgacaataaagctagg |
112 |
Q |
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| T |
44532568 |
ataccgggtcttgcgttatggtaggtaaagattttaatatttcctaaacgtagtggcaatatttatgctaaggcaacattgttgtgacaataaagctagg |
44532667 |
T |
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| Q |
113 |
agtttctaacacgtacaattaagagaagttttcttggattaaacgagggccaggctatgatttgtcttggtgttaaaacgtgggagaatttggttggctt |
212 |
Q |
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| T |
44532668 |
ggtttctaacacgtacaattaagagaagttttcttggattaaacgagggccaggctatgatttgtcttggtgttaaaacgtgggagaatttggttggctt |
44532767 |
T |
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| Q |
213 |
ggatttatgatttatcaatttgtattttgtagttttctctgtttggttgagtgaatggaataatatttcatagtaggcatcattttggatgactaattaa |
312 |
Q |
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| T |
44532768 |
gg--------------aatttgtattttgtagttttctctatttggttgagtgaatggaataatatttcatagtaggcatcattttggatgactaattaa |
44532853 |
T |
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| Q |
313 |
tataggagtatcatga |
328 |
Q |
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| T |
44532854 |
tataggagtatcatga |
44532869 |
T |
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