View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7774_low_6 (Length: 313)
Name: NF7774_low_6
Description: NF7774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7774_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 52088400 - 52088683
Alignment:
| Q |
19 |
tcttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctcattaaagaggtttgggaaaaatacat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52088400 |
tcttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctaattaaagaggtttgggaaaaatacat |
52088499 |
T |
|
| Q |
119 |
tcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgtca |
218 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52088500 |
tcatctcccttgaggtctctttaaacgacacagacaccccctctattttcttatttaacattgacctcccctattatttgacattgtttaacttccgtca |
52088599 |
T |
|
| Q |
219 |
agttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgctgatgtgaatttaacttctctgcaatcaacaccaaa |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52088600 |
agttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgttgatgtgaatttaacttctctgcaatcaacaccaaa |
52088683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 21 - 302
Target Start/End: Original strand, 52077600 - 52077881
Alignment:
| Q |
21 |
ttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctcattaaagaggtttgggaaaaatacattc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
52077600 |
ttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctaattaaagaggtttgggaaaaatacattc |
52077699 |
T |
|
| Q |
121 |
atcttccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaag |
220 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52077700 |
atctcccttgaggtctctttaaaagacacagacaccccctctattttcttatttaacattgacctcccctattatttgacattgtttaacttccgtcaag |
52077799 |
T |
|
| Q |
221 |
ttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgctgatgtgaatttaacttctctgcaatcaacaccaaa |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
52077800 |
ttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgttgatgtgaatttaacttctctgcaataaacaccaaa |
52077881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 29058674 - 29058388
Alignment:
| Q |
18 |
atcttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctcattaaagaggtttgggaaaaataca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||| |||||||||| |
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|
| T |
29058674 |
atcttgcaactcagtcttctattttatttacaaggtttcatcatatctgaaaatatttaagcttcccacattctaattacagaggtttgagaaaaataca |
29058575 |
T |
|
| Q |
118 |
ttcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgtc |
217 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
29058574 |
ttaatctctcttgaggtctctttaaatgacacagacacccccactattttcttatttaacattgacctcccctattatttgacactgtttaacttccgtc |
29058475 |
T |
|
| Q |
218 |
aagttatttttatcaaacaagaaaaa--gaaaaact-attgttgcctctcgctgatgtgaatttaacttctctgcaatcaacaccaaa |
302 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||| |||||||||||||||| |||||||||||| |
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|
| T |
29058474 |
aagttatttttatcaaacaaaaaaaaagaaaaaactaattgttgcctctcgttgatgt-aatttaacttctctgcgatcaacaccaaa |
29058388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 43899059 - 43898996
Alignment:
| Q |
104 |
ttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctatttt |
167 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||| ||||| || |||||||||||||||| |
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|
| T |
43899059 |
ttgggaaaactatattcatctcccttgaggtctcttgaaatgtaactcacaccccctctatttt |
43898996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 21 - 302
Target Start/End: Original strand, 29594707 - 29594988
Alignment:
| Q |
21 |
ttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctcattaaagaggtttgggaaaaatacattc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
29594707 |
ttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctaattaaagaggtttgggaaaaatacattc |
29594806 |
T |
|
| Q |
121 |
atcttccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaag |
220 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
29594807 |
atctcccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacctcccctattatttgacattgtttaacttccgtcaag |
29594906 |
T |
|
| Q |
221 |
ttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgctgatgtgaatttaacttctctgcaatcaacaccaaa |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
29594907 |
ttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgttgatgtgaatttaacttctctgcaattaacaccaaa |
29594988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 11353611 - 11353724
Alignment:
| Q |
106 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgt |
205 |
Q |
| |
|
||||||||||| |||| || |||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||| ||| | |
|
|
| T |
11353611 |
gggaaaaatacgttcacctcccttaaggtctcgttaaatgacacagacaccccctctattttcttatttaacaatgacctcccctactgtttaacacctt |
11353710 |
T |
|
| Q |
206 |
ttaacttccgtcaa |
219 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11353711 |
ttaacttccgtcaa |
11353724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 4564336 - 4564436
Alignment:
| Q |
130 |
gaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaagttattttta |
229 |
Q |
| |
|
||||||||||||||| | ||| ||||||| |||||||| |||| ||||| |||| |||| |||| |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
4564336 |
gaggtctctttaaataatacaaacaccccttctatttttttatctaacaatgacctcccatattgtttgacatcgtttaacttccgtcaaattattttta |
4564435 |
T |
|
| Q |
230 |
t |
230 |
Q |
| |
|
| |
|
|
| T |
4564436 |
t |
4564436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 4558105 - 4558211
Alignment:
| Q |
129 |
tgaggtctctttaaatgacacagacaccccctcta-ttttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaagttatttt |
227 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| | || |||| |||||||||| |||| |||||| || ||| |||| |||||||| |||| ||||||| |
|
|
| T |
4558105 |
tgaggtctctttaaataacacaaacaccccttttattttttttatttaacaatgacctcccctgttgtttaacatcctttaactttgatcaaattatttt |
4558204 |
T |
|
| Q |
228 |
tatcaaa |
234 |
Q |
| |
|
||||||| |
|
|
| T |
4558205 |
tatcaaa |
4558211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 12142133 - 12142073
Alignment:
| Q |
106 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctatttt |
167 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
12142133 |
gggaaaaatacactcatctcccttgaggtctctttaaatgacgccgaca-cccctctatttt |
12142073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 44539625 - 44539564
Alignment:
| Q |
106 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctatttt |
167 |
Q |
| |
|
|||||||||||||||| || || |||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
44539625 |
gggaaaaatacattcacctcccctgagttttctttaaatgacagagacaccccctctatttt |
44539564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 24153192 - 24153249
Alignment:
| Q |
106 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctcta |
163 |
Q |
| |
|
||||||| |||| ||| |||||||||||||| || |||||| |||||||||| ||||| |
|
|
| T |
24153192 |
gggaaaattacactcaccttccttgaggtctattaaaatgagacagacacccactcta |
24153249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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