View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7774_low_8 (Length: 309)

Name: NF7774_low_8
Description: NF7774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7774_low_8
NF7774_low_8
[»] chr6 (2 HSPs)
chr6 (19-296)||(14088046-14088323)
chr6 (19-51)||(14092578-14092610)
[»] chr2 (2 HSPs)
chr2 (19-296)||(33698372-33698649)
chr2 (19-52)||(33681559-33681592)
[»] chr8 (2 HSPs)
chr8 (69-296)||(24876826-24877053)
chr8 (19-52)||(24881291-24881324)
[»] chr1 (3 HSPs)
chr1 (19-206)||(46461122-46461309)
chr1 (200-296)||(46458149-46458245)
chr1 (19-48)||(46453879-46453908)
[»] chr7 (5 HSPs)
chr7 (22-191)||(9954937-9955106)
chr7 (186-296)||(9953459-9953568)
chr7 (19-51)||(32213836-32213868)
chr7 (21-55)||(32213119-32213153)
chr7 (22-51)||(9950088-9950117)


Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 14088046 - 14088323
Alignment:
Q  19 tagtaaacactaaatatttcacttattctcacaattctccacctcgttcaaaatttcaaaagaaacttcaaattttggacgaacaaattgcgtcttatta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14088046 tagtaaacactaaatatttcacttattctcacaattctccacctcgttcaaaatttgaaaagaaacttcaaattttggacgaacaaattgcgtcttatta 14088145  T
Q  119 tgcctccacatgaatcaacatgttagaatattgagcaagtccagacaatgttggaacttcccacctgacacaaccttggttaacatgtcagctgagttct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14088146 tgcctccacatgaatcaacatgttagaatattgagcaagtccagacaatgttggaacttcccacctgacacaaccttggttaacatgtcagctgagttct 14088245  T
Q  219 catcagtatgtaccttcgcaagagaaatacgaccttcctctatcacatcccgtacaaaatgataccttacatcgatat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14088246 catcagtatgtaccttcgcaagagaaatacgaccttcctctatcacatcccgtacaaaatgataccttacatcgatat 14088323  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 14092578 - 14092610
Alignment:
Q  19 tagtaaacactaaatatttcacttattctcaca 51  Q
    |||||||||||||||||||||||||||||||||    
T  14092578 tagtaaacactaaatatttcacttattctcaca 14092610  T

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Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 33698649 - 33698372
Alignment:
Q  19 tagtaaacactaaatatttcacttattctcacaattctccacctcgttcaaaatttcaaaagaaacttcaaattttggacgaacaaattgcgtcttatta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33698649 tagtaaacactaaatatttcacttattctcacaattctccacctcgttcaaaatttgaaaagaaacttcaaattttggacgaacaaattgcgtcttatta 33698550  T
Q  119 tgcctccacatgaatcaacatgttagaatattgagcaagtccagacaatgttggaacttcccacctgacacaaccttggttaacatgtcagctgagttct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33698549 tgcctccacatgaatcaacatgttagaatattgagcaagtccagacaatgttggaacttcccacctgacacaaccttggttaacatgtcagctgagttct 33698450  T
Q  219 catcagtatgtaccttcgcaagagaaatacgaccttcctctatcacatcccgtacaaaatgataccttacatcgatat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33698449 catcagtatgtaccttcgcaagagaaatacgaccttcctctatcacatcccgtacaaaatgataccttacatcgatat 33698372  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 33681592 - 33681559
Alignment:
Q  19 tagtaaacactaaatatttcacttattctcacaa 52  Q
    ||||||||||||||||||||||||||||||||||    
T  33681592 tagtaaacactaaatatttcacttattctcacaa 33681559  T

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Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 69 - 296
Target Start/End: Original strand, 24876826 - 24877053
Alignment:
Q  69 aaatttcaaaagaaacttcaaattttggacgaacaaattgcgtcttattatgcctccacatgaatcaacatgttagaatattgagcaagtccagacaatg 168  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  24876826 aaatttgaaaagaaacttcaaattttggacgaacaaattgcgtcttattatacctccacatgaatcaacatgttagaatattgagctagtccaaacaatg 24876925  T
Q  169 ttggaacttcccacctgacacaaccttggttaacatgtcagctgagttctcatcagtatgtaccttcgcaagagaaatacgaccttcctctatcacatcc 268  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| ||||||    
T  24876926 ttggaacttcccacctgacagaaccttggttaacatgtcagctgggttctcattagtatgtacctttgcaagagaaatacgaccttcctctatgacatcc 24877025  T
Q  269 cgtacaaaatgataccttacatcgatat 296  Q
    ||||||||||||||||||||||||||||    
T  24877026 cgtacaaaatgataccttacatcgatat 24877053  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 24881291 - 24881324
Alignment:
Q  19 tagtaaacactaaatatttcacttattctcacaa 52  Q
    ||||||||||||||||||||||||||||||||||    
T  24881291 tagtaaacactaaatatttcacttattctcacaa 24881324  T

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Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 46461309 - 46461122
Alignment:
Q  19 tagtaaacactaaatatttcacttattctcacaattctccacctcgttcaaaatttcaaaagaaacttcaaattttggacgaacaaattgcgtcttatta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46461309 tagtaaacactaaatatttcacttattctcacaattctccaccttgttcataatttgaaaagaaacttcaaattttggacgaacaaattgcgtcttatta 46461210  T
Q  119 tgcctccacatgaatcaacatgttagaatattgagcaagtccagacaatgttggaacttcccacctgacacaaccttggttaacatgt 206  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46461209 tgcctccacatgcatcaacatgttagaatattgagcaagtccagacaatgttggaacttcccacttgacacaaccttggttaacatgt 46461122  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 200 - 296
Target Start/End: Complemental strand, 46458245 - 46458149
Alignment:
Q  200 aacatgtcagctgagttctcatcagtatgtaccttcgcaagagaaatacgaccttcctctatcacatcccgtacaaaatgataccttacatcgatat 296  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46458245 aacatgtcagctgggttctcatcagtatgtaccttcgtatgagaaatacgaccttcctctatgacatcccgtacaaaatgataccttacatcgatat 46458149  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 46453908 - 46453879
Alignment:
Q  19 tagtaaacactaaatatttcacttattctc 48  Q
    ||||||||||||||||||||||||||||||    
T  46453908 tagtaaacactaaatatttcacttattctc 46453879  T

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Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 9955106 - 9954937
Alignment:
Q  22 taaacactaaatatttcacttattctcacaattctccacctcgttcaaaatttcaaaagaaacttcaaattttggacgaacaaattgcgtcttattatgc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  9955106 taaacactaaatatttcacttattctcacaattctccacctcgttcataatttgaaaagaaacttcaaattttggacaaacaaattgcgtcttattatgc 9955007  T
Q  122 ctccacatgaatcaacatgttagaatattgagcaagtccagacaatgttggaacttcccacctgacacaa 191  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9955006 ctccacacgaatcaacatgttagaatattgagcaagtccagacaatgttggaacttctcacctgacacaa 9954937  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 186 - 296
Target Start/End: Complemental strand, 9953568 - 9953459
Alignment:
Q  186 acacaaccttggttaacatgtcagctgagttctcatcagtatgtaccttcgcaagagaaatacgaccttcctctatcacatcccgtacaaaatgatacct 285  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||||| | |||||||||||||||||||||    
T  9953568 acacaaccttggt-aatatgtcagctgggttctcatcagtatgtacctttgtaagagaaatacgacctacctctatgaaatcccgtacaaaatgatacct 9953470  T
Q  286 tacatcgatat 296  Q
    |||||||||||    
T  9953469 tacatcgatat 9953459  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 32213836 - 32213868
Alignment:
Q  19 tagtaaacactaaatatttcacttattctcaca 51  Q
    |||||||||||||||||||||||||||||||||    
T  32213836 tagtaaacactaaatatttcacttattctcaca 32213868  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 32213153 - 32213119
Alignment:
Q  21 gtaaacactaaatatttcacttattctcacaattc 55  Q
    |||||||||||||||||||||||||||| ||||||    
T  32213153 gtaaacactaaatatttcacttattctcccaattc 32213119  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 9950117 - 9950088
Alignment:
Q  22 taaacactaaatatttcacttattctcaca 51  Q
    ||||||||||||||||||||||||||||||    
T  9950117 taaacactaaatatttcacttattctcaca 9950088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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