View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7774_low_9 (Length: 297)
Name: NF7774_low_9
Description: NF7774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7774_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 6551956 - 6551673
Alignment:
| Q |
9 |
gaagaaaataagttatttaaatttgaaggaaatgtttaaagaacaaagaaaacnnnnnnngcatacctcaaaaagagctttcaacacagaatctttaaca |
108 |
Q |
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| T |
6551956 |
gaagaaaataagttatttaaatttgaaggaaatgtttaaagaacaaagaaaacaaaaaaagcatacctcaaaaagagctttcaacacagaatctttaaca |
6551857 |
T |
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| Q |
109 |
tcactatcaatatttctcacaaataatgttctagaagggtgttcgccataagagttttctccggcgattgagctattacgaactccactgatgatttcag |
208 |
Q |
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| T |
6551856 |
tcactatcaatatttctcacaaataatgttctagaagggtgttcgccataagagttttctccggcgattgagctattacgaactccactgatgatttcag |
6551757 |
T |
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| Q |
209 |
aattcctttcaatagaggatggattttcaacgtctccaagatcaaaacctccattgctactgaaaaggtctagttcatctatgt |
292 |
Q |
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| T |
6551756 |
aattcctttcaatagaggatggattttcaacgtctccaagatcaaaacctccattgctactgaaaaggtctagttcatctatgt |
6551673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 49061082 - 49061200
Alignment:
| Q |
71 |
atacctcaaaaagagctttcaacacagaatctttaacatcactatcaatatttctcacaaataatgttctagaagggtgttcgccataagagttttctcc |
170 |
Q |
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|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| | |
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| T |
49061082 |
atacctcaaaaagagctttcaattcagaatcttcaacctcactatcaatatttctcacaaataatgttctagaagggtgttcaccagaagggttttctac |
49061181 |
T |
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| Q |
171 |
ggcgattgagctattacga |
189 |
Q |
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| T |
49061182 |
ggcgaatgaggtgttacga |
49061200 |
T |
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