View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7775_low_1 (Length: 803)
Name: NF7775_low_1
Description: NF7775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7775_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 739; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 18 - 787
Target Start/End: Complemental strand, 40635468 - 40634698
Alignment:
| Q |
18 |
atttctgtgatcaatcgttttgtgttcttataagcgtttatttatctgttttctttagagaagaattctcttttcttgcaaattgttctacagttaaaag |
117 |
Q |
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| T |
40635468 |
atttctgtgatcaatcgttttgtgttcttataagcgtttatttatctgttttctttagagaagaattctcttttcttgcaaattgttctacagttaaaag |
40635369 |
T |
|
| Q |
118 |
catcttagaatttgctaaatcgtagggtgaaggttgcccccactttacgcgggaaacatttggagggtgaagtttagacttatctctgagtggctcaata |
217 |
Q |
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| T |
40635368 |
tatcttagaatttgctaaatcgtagggtgaaggttgcccccactttacgcgggagacatttggagggtgaagtttagacttatctctgagtggctcaata |
40635269 |
T |
|
| Q |
218 |
acaacataatttgataccgcctttaaatttggattctggtaacattcaattccaaaagctaattcatggggtggtgattgtcccacttataaatataact |
317 |
Q |
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| T |
40635268 |
acaacataatttgataccgcctttaaatttggattctggtaacattcgattccaaaagctaattcatggggtggtgattgtcccacttataaatataact |
40635169 |
T |
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| Q |
318 |
actatttggactagtcaaagtggtaattccatcaaagaatataaaggtatcactgtcatttatcaaatgagatgctaaaccgtgatcaggtacagattca |
417 |
Q |
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| T |
40635168 |
actatttggactagtcaaagtggtaattccatcaaagaatataaaggtatcactgtcatttatcaaatgaaatgctaaactgtgatcaggtacagattca |
40635069 |
T |
|
| Q |
418 |
caaaatggtcaaaattatgttaagaactcagatgttaccctacctgaatttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcg |
517 |
Q |
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| T |
40635068 |
caaaatggtcaaaattatgttaagaactcagatgttaccctacctgaatttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcg |
40634969 |
T |
|
| Q |
518 |
aagaacagttccaacttttacatactgttgcgatggaaatttgtgacagtacctagaatgccttggctcccaacttgcatgtaatgcctacacaattcaa |
617 |
Q |
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| T |
40634968 |
aagaacagttccaacttttacatactgttgcgatggaaatttgtgacagtacctagaatgccttggctcccaacttgcatgtaatgcctacacaattcaa |
40634869 |
T |
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| Q |
618 |
aacacagccatttgaagatcaagatattcttctaagcgaattaacaactgatatatgatca-tttgaataaataaatatttaggcacaaaagacttatga |
716 |
Q |
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| T |
40634868 |
aacacagccatttgaagatcaagatattcttctaagcgaattaacaattgatatatgatcattttgaataaataaatatttaggcacaaaagacttatga |
40634769 |
T |
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| Q |
717 |
atcatttagctttgtttgacttagtacgcataatttgtggtatccgacatttatacaagaatttctcatga |
787 |
Q |
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| T |
40634768 |
atcatttagctttgtttgacttagtacgcataatttgtggtatccgacatttatacaagaatttctcatga |
40634698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 426 - 621
Target Start/End: Complemental strand, 40646892 - 40646698
Alignment:
| Q |
426 |
tcaaaattatgttaagaactcagatgttaccctacctgaatttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcgaagaacag |
525 |
Q |
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||||| |||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40646892 |
tcaaatttatgttaagaactcaaatattatg-tacctgaatttctgttctcaaacaaccatgtagagctaccactgtatacccgaattgacgaagaacag |
40646794 |
T |
|
| Q |
526 |
ttccaacttttacatactgttgcgatggaaatttgtgacagtacctagaatgccttggctcccaacttgcatgtaatgcctacacaattcaaaaca |
621 |
Q |
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| T |
40646793 |
ttccaacttttacatactgttgacatggaaatttgtgacagtacctaaaatgccttggctcccaacttccatgtaatgcctgcacagttcaaaaca |
40646698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 458 - 620
Target Start/End: Original strand, 4780843 - 4781005
Alignment:
| Q |
458 |
tacctgaatttctgttctcaaacagccatgtagagctaccactgtatacccgaattggcgaagaacagttccaacttttacatactgttgcgatggaaat |
557 |
Q |
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|||||||||||| | ||||||||||||||| ||||||||||| || || || ||||| |||||||||| ||||||||||||||| || ||| |||||||| |
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| T |
4780843 |
tacctgaatttcggatctcaaacagccatgcagagctaccacggtgtagccaaattgacgaagaacagctccaacttttacatattgctgccatggaaat |
4780942 |
T |
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| Q |
558 |
ttgtgacagtacctagaatgccttggctcccaacttgcatgtaatgcctacacaattcaaaac |
620 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| |
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| T |
4780943 |
ttgtgacagtacctagaatgccttggctcccaacttgcatgcaacgcctggccaattcaaaac |
4781005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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