View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7775_low_2 (Length: 795)
Name: NF7775_low_2
Description: NF7775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7775_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 673; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 18 - 784
Target Start/End: Original strand, 21055429 - 21056191
Alignment:
| Q |
18 |
cctaccacctttatctgcaacaagatatcctctatcaacatacattgatccccagattcaaaactatcaactaaactgtaaattatcttatgtcatcatt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055429 |
cctaccacctttatctgcaacaagatatcctctatcaacatacattgatccccagattcaaaactatcaactaaactgtaaattatcttatgtcatcatt |
21055528 |
T |
|
| Q |
118 |
cataaacttaaccattgtgtgtttagatgaggaataacatgggagggaaagtacatatatactttttgaaaggatgtatctaataaaatgctcctttttg |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055529 |
cataaacttaaccgttgtgtgtttagatgaggaataacatgggagggaaagtacatatatactttttgaaaggatgtatctaataaaatgctcctttttg |
21055628 |
T |
|
| Q |
218 |
atgctttagaagacagacnnnnnnnnaagtattttaatgaggcattttactactcacagtaaagaattgaaaaatacaccaaaaaaggtggaattatctc |
317 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21055629 |
atgctttagaagacagacttttttttaagtattttaatgaggcattttactactcacagtaaagcattgaaaaatacaccaaaaaaggtggaattatctc |
21055728 |
T |
|
| Q |
318 |
atgcatagagatttttactagttaaaggtgtcactgaaatttttaaaattcagaaaatactttggactctcattctgaattgatgttgcaatttctgatt |
417 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21055729 |
atgcatagagatttttactggttaaaggtgtcactgaaatttttaaaattcagaaaatactttggactctcattctgaattgatgttgcaattgctgatt |
21055828 |
T |
|
| Q |
418 |
atgtatctgagacctgtgagagtaggagtcccacaatattgggtgnnnnnnnatgtatctggtttatttcttgctgctttatatatctaattttttatgc |
517 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21055829 |
atgcatctgagacctgtgagagtaggagtcccacaatattgggtgttt----atgcatctggtttatttcttgctgctttatatatctaattttttatgc |
21055924 |
T |
|
| Q |
518 |
cggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaatgatattatttggttgtgtgataatttgttttttgataagtcact |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21055925 |
cggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaatgatattatttggttgtgtgataatttgttttttgataagtcact |
21056024 |
T |
|
| Q |
618 |
gcattggactgtgaaacaacaatgtactccagtgatgcattgtatacctctatttttggagttgcggataagtttacttactgcaagcagcattggagtg |
717 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
21056025 |
gcattggactgtgaaacaacaatgtgctccagtgatgcattgtatacctctatttttggagttgcggataagtttacttactggaagttgcattggagtg |
21056124 |
T |
|
| Q |
718 |
tttgagtttaacttgacaatggcatgcttatagtaaagtagattagatatagaaaaagttgatgtcc |
784 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
21056125 |
tttgagtttaacttgacaatggcatgcttattgtaaagtagattagatatagaaaaagttgatgtcc |
21056191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 6e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 38 - 330
Target Start/End: Complemental strand, 26363912 - 26363614
Alignment:
| Q |
38 |
caagatatcctctatcaa-catacattgatccc-cagattcaaaactatcaactaaactgtaaattatcttatgtcatcattcataaacttaaccattgt |
135 |
Q |
| |
|
|||| ||||||||||||| ||||||||| | | || ||||||||||||||||| ||||||| || |||| ||||||||||||||||| |||| ||| |
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| T |
26363912 |
caagttatcctctatcaaacatacattggttctacaaattcaaaactatcaactcgactgtaattttccttaggtcatcattcataaactcaacctctgt |
26363813 |
T |
|
| Q |
136 |
gtgtttagatgaggaataacatgggagggaaagtacatatatact-ttttgaaaggatgtatctaataaaatgctcc-tttttgatgctttagaagacag |
233 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||| | |||||||||||| | |||||||||||||||| ||||| ||| |||| ||| ||| |
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| T |
26363812 |
gtgtttagatgaggaataacatgggtgggaaagtacgtatattttgttttgaaaggatatctctaataaaatgctcctttttttatgttttacaaggcag |
26363713 |
T |
|
| Q |
234 |
ac--nnnnnnnnaagtattttaatgaggcattttactactcacagtaaagaattgaaaaatacaccaaaaaaggtggaattatctcatgcatagagatt |
330 |
Q |
| |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |
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| T |
26363712 |
acttaaaatttgaagtattttaatgaggcattttactactcacaataaagaattgaaaaatccaccaaaaaaggtggaattatcacatgaatagagatt |
26363614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 473 - 785
Target Start/End: Complemental strand, 26366064 - 26365759
Alignment:
| Q |
473 |
tatctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaa |
572 |
Q |
| |
|
||||||||||| | ||||||||||||| | ||| ||||||||||| ||||| ||||||| |||||| ||||||||||||||||| ||| |||| |||| |
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|
| T |
26366064 |
tatctggtttagtccttgctgctttatgtgtctgattttttatgctggcacaatatgatctttactggcatttaccccatttctggtttatctatttgaa |
26365965 |
T |
|
| Q |
573 |
tgatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtatacctctattt |
672 |
Q |
| |
|
|||| |||||| ||||||| |||||||||| |||||||||| ||| ||||| | |||| |||||||| | | ||||||||||||||||||||| ||| |
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| T |
26365964 |
tgatgttatttagttgtgtaataatttgttcattgataagtcgatgctttggattatgaatcaacaatgcagt--agtgatgcattgtatacctct-ttt |
26365868 |
T |
|
| Q |
673 |
ttggagttgcggataagtttacttactgcaagcagcattggagtgtttgagtttaacttgacaatggcatgcttatagtaaagtagattagatatagaaa |
772 |
Q |
| |
|
|||| |||| || ||||||||||| || |||| ||| ||||||||| |||||| |||| |||||||||| ||||| ||| | |||| ||||||||| |
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|
| T |
26365867 |
ttgg-gttgttgacaagtttacttattggaagctgca---gagtgtttgggtttaatttgaaaatggcatgcctataggaaatttgattgaatatagaaa |
26365772 |
T |
|
| Q |
773 |
aagttgatgtcca |
785 |
Q |
| |
|
|||||||| |||| |
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|
| T |
26365771 |
aagttgatatcca |
26365759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 476 - 785
Target Start/End: Complemental strand, 26363573 - 26363267
Alignment:
| Q |
476 |
ctggtttatttcttgctgctttatatatctaatttttt-atgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaatg |
574 |
Q |
| |
|
|||||||| ||| ||||||||||| | ||| ||||||| |||| |||||||| ||| |||||| ||||||||||||||||| ||| |||| |||||| |
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|
| T |
26363573 |
ctggtttagttcctgctgctttatgtgtctgatttttttatgctggcactatgcgatctttactggcatttaccccatttctggtttatctatttgaatg |
26363474 |
T |
|
| Q |
575 |
atattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtatacctctattttt |
674 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||| ||| | ||||| ||||||||||||||| | | |||| |||||| ||| |||| ||| | |
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|
| T |
26363473 |
atattatttggttgtgtaataatttgttctttgataagtaacttctttggattgtgaaacaacaatgcagtagtgtgaagcattgcatatctct-tttgt |
26363375 |
T |
|
| Q |
675 |
ggagttgcggataagtttactta-ctgcaagcagcattggagtgtttgagtttaacttgacaatggcatgcttatagtaaagtagattagatatagaaaa |
773 |
Q |
| |
|
|| |||| || ||||||||||| | |||| ||| |||||| || ||||||||||| |||||||||||||||| ||| | |||| |||| ||||| |
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|
| T |
26363374 |
gg-gttgttgacaagtttacttatgggaaagctgca---gagtgtctgtgtttaacttgagaatggcatgcttataggaaatttgatttaatattgaaaa |
26363279 |
T |
|
| Q |
774 |
agttgatgtcca |
785 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26363278 |
agttgatgtcca |
26363267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 71 - 330
Target Start/End: Complemental strand, 26366435 - 26366169
Alignment:
| Q |
71 |
agattcaaaactatcaactaaactgtaaattatcttatgtcatcattcataaacttaaccattgtgtgtttagatgaggaataacatgggagggaaagta |
170 |
Q |
| |
|
||||||||||| ||||||| |||||||| || |||| || | ||| ||| |||| |||| |||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
26366435 |
agattcaaaacaatcaactcaactgtaactttccttaggttaccatccatcaactcaaccgttgtgt--ttagatgaggaataacatgggagggaaagca |
26366338 |
T |
|
| Q |
171 |
catatatactt---tttgaaaggatgtat----ctaataaaatgctcctttttgatgctttagaagacagacnnnnnnnn--aagtattttaatgaggca |
261 |
Q |
| |
|
|||| || || ||| ||||||| || |||||||||||||||||||| ||| |||| ||| || | |||||||||||||||||| |
|
|
| T |
26366337 |
catacatttttatttttaaaaggatagatatctctaataaaatgctccttttttatgttttacaagttagtcttaaaatttcaagtattttaatgaggca |
26366238 |
T |
|
| Q |
262 |
ttttactactcacagtaaagaattgaaaaatacaccaaaaaaggtggaattatctcatgcatagagatt |
330 |
Q |
| |
|
|||||||||||||| ||||||||||||| || ||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
26366237 |
ttttactactcacaataaagaattgaaatatccaccaaaaagagtggaattatcacatgcatggagatt |
26366169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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