View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7775_low_3 (Length: 740)
Name: NF7775_low_3
Description: NF7775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7775_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 17137136 - 17137616
Alignment:
| Q |
1 |
aaggaagattttttctgctatctaaaatggccctcaaatcctgcaaaaataaacacaaattaagtcatgatttattcaagatttcttaaacagtgaaggc |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17137136 |
aaggaagattttttccgctatctaaaatggccctcaaatcctgcaaaaataaacacaaattaagtcatgatttattcaagatttcttaaacagtgaaggc |
17137235 |
T |
|
| Q |
101 |
tgtgtcttagttaaaacttaactctgtgatttcttttgtaccaatctcctgcctgtatggtgaaatctccggatggaggatcaaaaggtacaggaatcac |
200 |
Q |
| |
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||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17137236 |
tgtttcttagttaaaacttaactgtgtgatttcttttgtaccaatctcctgccagtatggtgaaatctccggatggaggatcaaaaggtacaggaatcac |
17137335 |
T |
|
| Q |
201 |
ggagcgagtagcgattgtgaaaccgccataaccacctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctgccaatctgatcttttacttga |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17137336 |
ggagcgagtagcgattgtgaaaccgccataacctcctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctgccaatctgatcttttacttga |
17137435 |
T |
|
| Q |
301 |
agaatataagtgaagttctgtcctggagagattggacagtttgtaccatacactccgtcctgccacgagtttctcctctgcagcactccattcctataga |
400 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||| |
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| T |
17137436 |
agaatataagt---gttctttcctggagagattggacaatttgtaccatacactccatcttgccatgagtttctcctctgcagcactccattcctataga |
17137532 |
T |
|
| Q |
401 |
attacataatctaaaaacactgaattttcaacatgtatgatagaatatgtacattatagtcttagtcctgatattgttatttac |
484 |
Q |
| |
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|||||||||||||||||||||||||| || |||| ||||||||||||||||||| ||||| || |||| |||||||||||||| |
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| T |
17137533 |
attacataatctaaaaacactgaattctcggcatggatgatagaatatgtacattgtagtcctaatcctaatattgttatttac |
17137616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 480
Target Start/End: Complemental strand, 17346641 - 17346179
Alignment:
| Q |
17 |
gctatctaaaatggccctcaaatcctgcaaaaataaacacaaattaagtcatgatttattcaagatttcttaaacagtgaaggctgtgtcttagttaaaa |
116 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||| ||||||||| | |||||||||||| |
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| T |
17346641 |
gctatctaaaatggctctcaaatcctgcaaaaa-aaacacagatgaagtcatgacctattcaagatttcttaaaccgtgaaggctatttcttagttaaaa |
17346543 |
T |
|
| Q |
117 |
cttaactctgtgatttcttttgtaccaatctcctgcctgtatggtgaaatctccggatggaggatcaaaaggtacaggaatcacggagcgagtagcgatt |
216 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |
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| T |
17346542 |
cttaactgtgtgatttcttttgtaccaatctcctgccaatatggtgtaatctccggatggaggatcgaaaggtacgggaatcacggagcgactagcgatt |
17346443 |
T |
|
| Q |
217 |
gtgaaaccgccataaccacctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctgccaatctgatcttttacttgaagaatataagtgaagt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17346442 |
gtgaaaccgccataaccacctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctaccaatctgatcttttacttgaagaatataagtgaagt |
17346343 |
T |
|
| Q |
317 |
tctgtcctggagagattggacagtttgtaccatacactccgtcctgccacgagtttctcctctgcagcactccattcctatagaattacataatctaaaa |
416 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| ||| |
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| T |
17346342 |
tctgtcctggagagattggacaatttgtaccatacactccatcctgccatgagtttctcctctgtagcactccattcctataaaattacataatcttaaa |
17346243 |
T |
|
| Q |
417 |
acactgaattttcaacatgtatgatagaatatgtacattatagtcttagtcctgatattgttat |
480 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||| |||| || ||||||||||||||||||||| |
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|
| T |
17346242 |
acactgaattctcaacacggatgatagaatatgtgcattgtactcttagtcctgatattgttat |
17346179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 526 - 716
Target Start/End: Complemental strand, 17346166 - 17345972
Alignment:
| Q |
526 |
ttttatacaggcggatcaccaatttagtccttagaattataggtgtctggcggggt---ggtctctgaaattaacgaaattaaaaaataaccatgaaatt |
622 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| |||||||||| || | || | ||||||||||||||||| |||| |||||||| |||||||| |
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|
| T |
17346166 |
ttttataccggcggaccaccaatttagtccttaaaattataggtctcatgtaggttccaggtctctgaaattaacggaatttaaaaataaatatgaaatt |
17346067 |
T |
|
| Q |
623 |
gaaatccttgattgtattgttccactgaggattgttccatttattccccgaaattgtttcagagg-gcgcaaagattttcaatttaagtaatcat |
716 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||| ||||||||||||| ||||||| ||||||||| | | | |||||||||||||||||||||| |
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|
| T |
17346066 |
gaaatcctcgattgtattggtcctttgaggatggttccatttattcgtcgaaattatttcagaggaactcgaggattttcaatttaagtaatcat |
17345972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 606 - 723
Target Start/End: Original strand, 17137689 - 17137807
Alignment:
| Q |
606 |
aaaataaccatgaaattgaaatccttgattgtattgttccactgaggattgttccatttattccccgaaattgtttcagag-ggcgcaaagattttcaat |
704 |
Q |
| |
|
||||||| |||||| ||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| | | | | |||||||||| |
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|
| T |
17137689 |
aaaataattatgaaaatgaaatcctcgattgatttgttcgtttgaggattgttccatttattccccgaaattgtttcagagcgactcgaggattttcaat |
17137788 |
T |
|
| Q |
705 |
ttaagtaatcattaagaat |
723 |
Q |
| |
|
|||||| |||||| ||||| |
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|
| T |
17137789 |
ttaagtgatcattgagaat |
17137807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 230 - 356
Target Start/End: Original strand, 28940790 - 28940916
Alignment:
| Q |
230 |
aaccacctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctgccaatctgatcttttacttgaagaatataagtgaagttctgtcctggaga |
329 |
Q |
| |
|
||||||| |||||||||||||| ||||| || ||||| ||||| |||| ||||| |||||||| |||||||| | || |||||||||| || |||| |
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|
| T |
28940790 |
aaccaccagctgccttgtgaaaagcaagagatggaaaatagaagaagcttccaatttgatctttgacttgaagtgtgtatgtgaagttcttcccaggagg |
28940889 |
T |
|
| Q |
330 |
gattggacagtttgtaccatacactcc |
356 |
Q |
| |
|
||| ||||| |||||||||| ||||| |
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|
| T |
28940890 |
gatgggacatgttgtaccataaactcc |
28940916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 319
Target Start/End: Complemental strand, 55711378 - 55711324
Alignment:
| Q |
265 |
aagtagaaatagctgccaatctgatcttttacttgaagaatataagtgaagttct |
319 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||||| ||||||||||||||| |
|
|
| T |
55711378 |
aagtagaaatagctaccaatctgatctttcacctgaagagtataagtgaagttct |
55711324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 125 - 397
Target Start/End: Original strand, 37091862 - 37092134
Alignment:
| Q |
125 |
tgtgatttcttttgtaccaatctcctgcctgtatggtgaaatctccggatggaggatcaaaaggtacaggaatcacggagcgagtagcgattgtgaaacc |
224 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||| | ||| | ||| ||| || |
|
|
| T |
37091862 |
tgtgatttctgttgtaccaatctcctgccaatatggtgaaatcattcgatggaggaggaaacggtacaggaatcatagggcggctgttaattttgatgcc |
37091961 |
T |
|
| Q |
225 |
gccataaccacctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctgccaatctgatcttttacttgaagaatataagtgaagttctgtcct |
324 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |||||||| || ||||| ||||||||||||||||||||||||| |||||| |||||||| ||| |
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|
| T |
37091962 |
accataaccacctgcggccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttacttgaagaacataagtaaagttctgccct |
37092061 |
T |
|
| Q |
325 |
ggagagattggacagtttgtaccatacactccgtcctgccacgagtttctcctctgcagcactccattcctat |
397 |
Q |
| |
|
|| | |||||||||||||| ||||| ||||| || ||||| || || ||||||||| ||||||||||||||| |
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|
| T |
37092062 |
ggtggaattggacagtttgttccatatactccatcttgccatgaattcctcctctgctgcactccattcctat |
37092134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 53754418 - 53754506
Alignment:
| Q |
230 |
aaccacctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctgccaatctgatcttttacttgaagaatataagtgaagttc |
318 |
Q |
| |
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||||||| ||||| || |||||||| || || ||||||||| || |||| ||||| ||||| || |||||||||||||| ||||||||| |
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| T |
53754418 |
aaccaccagctgctttttgaaatgctagagatggaaagtagtaaaagcttccaatttgatccttcacttgaagaatatatgtgaagttc |
53754506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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