View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7775_low_4 (Length: 520)
Name: NF7775_low_4
Description: NF7775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7775_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 50122798 - 50122279
Alignment:
| Q |
1 |
tatttatggcgtggacattcctcttttacgcttctatgtcaagtaagtgtatccttgactcttaacgaacaaaaattgattttgattgaaaattagctga |
100 |
Q |
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| T |
50122798 |
tatttatggcgtggacattcctcttttaagcttctatgtcaagtaagtgtatccttgactcttaacgaacaaaaattgattttgattgaaaattagctga |
50122699 |
T |
|
| Q |
101 |
atgtaaaataatttatatttgaataaatttgcacaaaaataactatatcaatttatgtttggatagtacgaatcagagttggttttgtatttatgtcaac |
200 |
Q |
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| T |
50122698 |
atgtaaaataattaat-tttgaataaatttgcacaaaaataactatatcaatttatgtttggatagtacgaatcagagttggttttgtatttatgtcaac |
50122600 |
T |
|
| Q |
201 |
aaatttgagaatttattctatgttgcgagagaaaatagaaatatgaacttttag--------------------ggaatcaattctaaaatccaaacata |
280 |
Q |
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| T |
50122599 |
aaatttgagaatttattctatgttgcgagagaaaatagaaatatgaacttttaggtagaattgatcttaagactggaatcaattctaaagtccaaacata |
50122500 |
T |
|
| Q |
281 |
acaatttatggtctaatcacatttgacaaaccaaaatgtgattacagaaagtacaaacatagtctaaatcgcacgtagtagcatatattatgcacccaca |
380 |
Q |
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| T |
50122499 |
ataatttatggtctaatcacatttgacaaaccaaaatgtgattacagaaagtacaaacatagtctaaatcgcacgtagtagcatatattatgcacccaca |
50122400 |
T |
|
| Q |
381 |
tattctaattgatctattttagaatttgaattgaacttaaataagttctacatgacttatatgtaacgtgagatatatatcacattcaacgtgaaatttt |
480 |
Q |
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| T |
50122399 |
tattctaattgatctattttagaatttgaattgaactt-aataagttctacatgacttatacgtaacgtgagatatatatcacattcaatgtgaaatttt |
50122301 |
T |
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| Q |
481 |
taacacttttacatgtatgttct |
503 |
Q |
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| T |
50122300 |
taacac-tttacatgtatgttct |
50122279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 11458979 - 11458923
Alignment:
| Q |
267 |
aaaatccaaacataacaatttatggtctaatcacatttgacaaaccaaaatgtgatt |
323 |
Q |
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|||| |||||| ||||||||||||||| |||||| ||||| ||||||||||||||| |
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| T |
11458979 |
aaaagccaaacgtaacaatttatggtcaaatcacgtttgattaaccaaaatgtgatt |
11458923 |
T |
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