View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7775_low_7 (Length: 393)
Name: NF7775_low_7
Description: NF7775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7775_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 109 - 367
Target Start/End: Original strand, 31976763 - 31977021
Alignment:
| Q |
109 |
gtccagctattacgatttgggagaccaaaatattgatttaagcaactcttattgttgagtgacaaacacatcctccatatttcagaaaagaacaaatagt |
208 |
Q |
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| T |
31976763 |
gtccagctattacgatttgggagaccaaaatattgatttaagcaactcttattgttgagtgacaaacacatcctccaaatttcagaaaagaacaaatagt |
31976862 |
T |
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| Q |
209 |
tgatgattatatcaaaagtttcggtcaaaatataagaaaataattttcctacaacagcacgtttacgaaatttcatgtaataattgatcttcatcgttga |
308 |
Q |
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| T |
31976863 |
taatgattatttcaaaagtttcggtcaaaatataagaaaataattttcctacaaccgcacgtttacgaaatttcatgtaataattgatcttcatcgttga |
31976962 |
T |
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| Q |
309 |
tttgagatcggataatttagatcaaacaatcaatttcatgttgttaaatgatctcgtta |
367 |
Q |
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| T |
31976963 |
tttgagatcggacaatttagatcaaacaatcaattttatgttgttaaatgatctcgtta |
31977021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 31977038 - 31977087
Alignment:
| Q |
326 |
tagatcaaacaatcaatttcatgttgttaaatgatctcgttatcgttgat |
375 |
Q |
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| T |
31977038 |
tagatcaaacaatcagtttcatgttgttaaacgatctggttgtcgttgat |
31977087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 23306366 - 23306309
Alignment:
| Q |
305 |
ttgatttgagatcggataatttagatcaaacaatcaatttcatgttgttaaatgatct |
362 |
Q |
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| T |
23306366 |
ttgatttgagattggatgatctaaatcaaacaaacaatttcatgcagttaaatgatct |
23306309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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