View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7775_low_8 (Length: 292)
Name: NF7775_low_8
Description: NF7775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7775_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 42673312 - 42673581
Alignment:
| Q |
1 |
aaaagaagagtaggtcagcgtcagttggtagagaagctggtttcgcgaaacagaaggtaattaatgtgcatgaagaagatgaagaagaaagaatgacaac |
100 |
Q |
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| T |
42673312 |
aaaagaagagtaggtcagcgtcagttggtagagaagctggtttcgcgaaacagaaggtaattaatgtgcatgaagaagatgaagaagaaagaatgacaac |
42673411 |
T |
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| Q |
101 |
atcaaatgaaattgaacgcaacaaatttatatttaaaagatacaatattgaagaaattgaagttgcaacaaattactttgatatggatggcaaaattggt |
200 |
Q |
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| T |
42673412 |
atcaaatgaaattgaacgcaacaaatttatatttaaaagatacaatattgaagaaattgaagttgcaacaaattactttgatatggatggcaaaattggt |
42673511 |
T |
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| Q |
201 |
gaaggtggatatggacctgttttcaaaggagtacttgacaacactgatgttgcagttaaagccttaagac |
270 |
Q |
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| T |
42673512 |
gaaggtggatatggacctgttttcaaaggagtacttgacaacactgatgttgcagttaaagccttaagac |
42673581 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 6516070 - 6516163
Alignment:
| Q |
145 |
atattgaagaaattgaagttgcaacaaattactttgatatggatggcaaaattggtgaaggtggatatggacctgttttcaaaggagtacttga |
238 |
Q |
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| T |
6516070 |
atattaaagaaattcaagttgcaactaatggctttgacaatgctctcaaaattggtgaaggggggtatggacctgtttttaaaggtgtgcttga |
6516163 |
T |
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