View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7776_high_2 (Length: 370)
Name: NF7776_high_2
Description: NF7776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7776_high_2 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 8590520 - 8590856
Alignment:
| Q |
19 |
aagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaa |
118 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8590520 |
aagcccaataaattgctgctaagtggttcagatttagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaa |
8590619 |
T |
|
| Q |
119 |
caacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcgtccagtacttggttgatagaatcatgtgcaat |
218 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
8590620 |
caacatgtttaagttcatcaagccacttcttcacatatttgcttcggtactgctttatctctgcttcgtccagtacttcgttgatagaatcaagtgcaat |
8590719 |
T |
|
| Q |
219 |
attgagttctttcacaaggtcatcaacattattacgaccgaagtagtctctgatatcaaccgaagccaacttctcaaaaatcacttgaaaggaagactga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8590720 |
attgagttctttcacaaggtcatcaacattattacgaccgaattagtctctgatatcaaccgaagccaacttctcaataatcacttgaaaggaagactga |
8590819 |
T |
|
| Q |
319 |
agaaatgccccagctaccaactctgccatgatataat |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8590820 |
agaaatgccccagctaccaactctgccatgatataat |
8590856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 8455445 - 8455780
Alignment:
| Q |
19 |
aagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8455445 |
aagcccaataaattggtggtaagtggttcagattctgctttcaggttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaa |
8455544 |
T |
|
| Q |
119 |
caacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcgtccagtacttggttgatagaatcatgtgcaat |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8455545 |
caacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcgtctagtacttggttgatagaatcaagtgcaat |
8455644 |
T |
|
| Q |
219 |
attgagttctttcacaaggtcatcaacattattacgaccgaagtagtctctgatatcaaccgaagccaacttctcaaaaatcacttgaaaggaagactga |
318 |
Q |
| |
|
||| ||||||||| ||||| |||||||||| |||| || |||||||||||| |||||||||||||| |||||||| | ||||| |||||||||||||||| |
|
|
| T |
8455645 |
attaagttctttcgcaagggcatcaacattgttactactgaagtagtctctaatatcaaccgaagctaacttctcgataatcaattgaaaggaagactga |
8455744 |
T |
|
| Q |
319 |
agaaatgccccagctaccaactctgccatgatataa |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8455745 |
agaaatgccccagctaccaactctgccatgatataa |
8455780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 21 - 355
Target Start/End: Complemental strand, 6479218 - 6478884
Alignment:
| Q |
21 |
gcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaaca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6479218 |
gcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagatatctcatctaatagttggtctgcttcataaaca |
6479119 |
T |
|
| Q |
121 |
acatgtttaagtccatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcgtccagtacttggttgatagaatcatgtgcaatat |
220 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||||| |
|
|
| T |
6479118 |
acatgtttaagtttatcaagccacttcttcacatatatgatttggtactgctttatctctgcttcttccagcacatggttgatagaattgagtgcaatat |
6479019 |
T |
|
| Q |
221 |
tgagttctttcacaaggtcatcaacattattacgaccgaagtagtctctgatatcaaccgaagccaacttctcaaaaatcacttgaaaggaagactgaag |
320 |
Q |
| |
|
| |||||||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6479018 |
taagttctttcacaaggtcatcaacatttttactactgaagtagtctctaatatcaaccgaagccaacttctcaaaaatcacttgaaaagaagactgaag |
6478919 |
T |
|
| Q |
321 |
aaatgccccagctaccaactctgccatgatataat |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6478918 |
aaatgccccagctaccaactctgccatgatataat |
6478884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 6736781 - 6737115
Alignment:
| Q |
19 |
aagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6736781 |
aagcccaataaattggtggtaagtggttcagattcagctttcaccttatttagcattgcatcagtagaaatctcatccaatagttggtctgcttcataaa |
6736880 |
T |
|
| Q |
119 |
caacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcgtccagtacttggttgatagaatcatgtgcaat |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| | |
|
|
| T |
6736881 |
gaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcgtctagtacttggttgatagaatcaagtgcatt |
6736980 |
T |
|
| Q |
219 |
attgagttctttcacaaggtcatcaacattattacgaccgaagtagtctctgatatcaaccgaagccaacttctcaaaaatcacttgaaaggaagactga |
318 |
Q |
| |
|
||| ||||||||| |||| |||||||||| |||| || |||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6736981 |
attaagttctttcgcaagagcatcaacattgttactactgaagtagtctctaatatcaactgaagccaacttctcaataatcacttgaaaggaagactga |
6737080 |
T |
|
| Q |
319 |
agaaatgccccagctaccaactctgccatgatata |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6737081 |
agaaatgccccagctaccaactctgccatgatata |
6737115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 6553684 - 6553343
Alignment:
| Q |
11 |
ctgaaatgaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgc |
110 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6553684 |
ctgaaacgaaacccaataaattggtggtaagtggttcagattcagctttttgcttatttatcattgcatcagtagaaatctcatctaatagttggtctgc |
6553585 |
T |
|
| Q |
111 |
ttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcgtccagtacttggttgatagaatca |
210 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6553584 |
ctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcgtctagtacttggttgatagaatca |
6553485 |
T |
|
| Q |
211 |
tgtgcaatattgagttctttcacaaggtcatcaacattattacgaccgaagtagtctctgatatcaaccgaagccaacttctcaaaaatcacttgaaagg |
310 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||| || ||||||||||||||| |||| |||||||||||||||| |||||||||||||| |
|
|
| T |
6553484 |
agtgcaatattaagttctttcacaagttcatcaacattgttactactaaagtagtctctgataccaacggaagccaacttctcaataatcacttgaaagg |
6553385 |
T |
|
| Q |
311 |
aagactgaagaaatgccccagctaccaactctgccatgatat |
352 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6553384 |
aagactgaagaaatgccccggctaccaactctgccatgatat |
6553343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 6948060 - 6948400
Alignment:
| Q |
19 |
aagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |
|
|
| T |
6948060 |
aagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtctgcctcataga |
6948159 |
T |
|
| Q |
119 |
caacatgtttaagtccatcaagccacttcttca------catatttgttttggtactgctttatctctgcttcgtccagtacttggttgatagaatcatg |
212 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||| | |
|
|
| T |
6948160 |
caacatgtttaagttcatcaagccacttcttcacattcacatatttcttttggtactgctttatctctgcttcgtccagtactaggttgatagagtcaag |
6948259 |
T |
|
| Q |
213 |
tgcaatattgagttctttcacaaggtcatcaacattattacgaccgaagtagtctctgatatcaaccgaagccaacttctcaaaaatcacttgaaaggaa |
312 |
Q |
| |
|
|||| || |||||||||||||||||||||||||| |||| || ||||||||||||||| |||| |||||||||||||||| |||||||||||| ||| |
|
|
| T |
6948260 |
tgcagaatgaagttctttcacaaggtcatcaacattgttactactaaagtagtctctgataccaacagaagccaacttctcaataatcacttgaaaagaa |
6948359 |
T |
|
| Q |
313 |
gactgaagaaatgccccagctaccaactctgccatgatata |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6948360 |
gactgaagaaatgccccagctaccaactctgccatgatata |
6948400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 6519399 - 6519066
Alignment:
| Q |
20 |
agcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaac |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6519399 |
agccaaataaattggtggtaagtggttcagattcagctttcaacttatatatcattgcatcagtagaaatctcatctaatagttggtctgcttcataaac |
6519300 |
T |
|
| Q |
120 |
aacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcgtccagtacttggttgatagaatcatgtgcaata |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| || || || ||||||||||||| || | | |
|
|
| T |
6519299 |
aacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttcagctctgcttcttcaagcacatggttgatagaattgagtttatga |
6519200 |
T |
|
| Q |
220 |
ttgagttctttcacaaggtcatcaacattattacgaccgaagtagtctctgatatcaaccgaagccaacttctcaaaaatcacttgaaaggaagactgaa |
319 |
Q |
| |
|
| ||||||||| ||||| |||||||||| | || || |||||||||||| |||| ||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6519199 |
tcaagttctttcgcaagggcatcaacattgtcactactgaagtagtctctaatatgaacagacgccaacttctcaaaaatcacttgaaaggaagactgaa |
6519100 |
T |
|
| Q |
320 |
gaaatgccccagctaccaactctgccatgatata |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
6519099 |
gaaatgccccagctaccaactctgccatgatata |
6519066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 43 - 208
Target Start/End: Original strand, 5281466 - 5281631
Alignment:
| Q |
43 |
ggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagtccatcaagcc |
142 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||| ||||||| ||||||||| || | ||||||||| ||||| ||| |||||||||| ||||||||| |
|
|
| T |
5281466 |
ggttcagattcatctttcagcttattcagttgtgcgtcagtagcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagcc |
5281565 |
T |
|
| Q |
143 |
acttcttcacatatttgttttggtactgctttatctctgcttcgtccagtacttggttgatagaat |
208 |
Q |
| |
|
||||||| |||||| || ||| ||||||| || |||||||| ||||| ||||| || ||||||| |
|
|
| T |
5281566 |
acttctttacatatgtgcttttgtactgcatttgttctgcttcttccagcacttgatttatagaat |
5281631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 5299587 - 5299708
Alignment:
| Q |
87 |
aatctcatctaatagttggtctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcg |
186 |
Q |
| |
|
||||||||| || ||||| ||||||||||| |||||||||||||| || |||||||||||||||| ||| | ||||||| |||||| |||| ||||| |
|
|
| T |
5299587 |
aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttct |
5299686 |
T |
|
| Q |
187 |
tccagtacttggttgatagaat |
208 |
Q |
| |
|
|| ||||| ||||||||||||| |
|
|
| T |
5299687 |
tcgagtacatggttgatagaat |
5299708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 8480045 - 8479979
Alignment:
| Q |
84 |
agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagtccatcaagccacttcttc |
150 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
8480045 |
agaaatctcatgtaatagttggtttgcttcataaacaacatgtttaagttcatcaagtcaattcttc |
8479979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 208
Target Start/End: Original strand, 5250981 - 5251146
Alignment:
| Q |
43 |
ggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagtccatcaagcc |
142 |
Q |
| |
|
|||| |||||||||||||||||| || || ||||||||| | |||||||||||| || ||||| | ||||| || ||||||||| ||||||||| |
|
|
| T |
5250981 |
ggttgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagcc |
5251080 |
T |
|
| Q |
143 |
acttcttcacatatttgttttggtactgctttatctctgcttcgtccagtacttggttgatagaat |
208 |
Q |
| |
|
|||||||||| || || ||||||| ||||| ||||| ||||| |||| || ||||||||||||| |
|
|
| T |
5251081 |
acttcttcacgtacatgctttggtattgcttcatctccgcttcttccaacacatggttgatagaat |
5251146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 6917935 - 6918065
Alignment:
| Q |
79 |
tcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgctttatct |
178 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||||| || | ||||| || |||||||||| |||||||| | | ||||||||||||||||| || |
|
|
| T |
6917935 |
tcagtagaaatcacatctagaagttggtctacttcatatacctcgtgtttgagatcatcaagccaattcttcacgtctcggttttggtactgctttacct |
6918034 |
T |
|
| Q |
179 |
ctgcttcgtccagtacttggttgatagaatc |
209 |
Q |
| |
|
|||| || || || |||| ||||||||||| |
|
|
| T |
6918035 |
ctgcatcatcaagcacttcattgatagaatc |
6918065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 209
Target Start/End: Original strand, 7750910 - 7751044
Alignment:
| Q |
75 |
tgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgcttt |
174 |
Q |
| |
|
||||||||||| |||| |||| |||||||| ||| ||| || ||| ||||||| || |||||||||| |||||||| | | || |||||||| |||| |
|
|
| T |
7750910 |
tgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaattcttcacgtttcggtgttggtactccttt |
7751009 |
T |
|
| Q |
175 |
atctctgcttcgtccagtacttggttgatagaatc |
209 |
Q |
| |
|
|| ||||| || |||||||||| ||||||||||| |
|
|
| T |
7751010 |
atatctgcatcatccagtacttcattgatagaatc |
7751044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 8479926 - 8479869
Alignment:
| Q |
238 |
tcatcaacattattacgaccgaagtagtctctgatatcaaccgaagccaacttctcaa |
295 |
Q |
| |
|
||||| ||||||||| || |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8479926 |
tcatccacattattattactgaagtagtctctaatatcaaccgaagccaacttctcaa |
8479869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 5268903 - 5269033
Alignment:
| Q |
78 |
atcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgctttatc |
177 |
Q |
| |
|
|||||| | |||||||||||| || ||||| | ||||| || ||||||||| ||||||||||||||||||| || || ||||| ||||||| ||| |
|
|
| T |
5268903 |
atcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggaactgcttcatc |
5269002 |
T |
|
| Q |
178 |
tctgcttcgtccagtacttggttgatagaat |
208 |
Q |
| |
|
|| ||||| |||| || ||||||||||||| |
|
|
| T |
5269003 |
tcagcttcttccaacacatggttgatagaat |
5269033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 4388128 - 4387995
Alignment:
| Q |
75 |
tgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgcttt |
174 |
Q |
| |
|
||||||||| | |||||||||||| || ||||| | ||||| || ||||||||| ||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
4388128 |
tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcattatgtttaagatcatcaagccacttcttcacggacatgctttggtactgcttc |
4388029 |
T |
|
| Q |
175 |
atctctgcttcgtccagtacttggttgatagaat |
208 |
Q |
| |
|
||||| ||||| |||| || |||||||||||| |
|
|
| T |
4388028 |
atctccgcttcttccaacacacggttgatagaat |
4387995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 8568144 - 8568067
Alignment:
| Q |
97 |
aatagttggtctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgcttt |
174 |
Q |
| |
|
|||||||| || ||||||| || ||||||| ||| || |||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
8568144 |
aatagttgctcaacttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgcttt |
8568067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 22 - 352
Target Start/End: Complemental strand, 6712 - 6382
Alignment:
| Q |
22 |
cccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaacaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6712 |
cccaataaattggtggtaagtggttcagattcagctttttgcttatttatcattgcatcagtagaaatctcatctaatagttggtctgcctcataaacaa |
6613 |
T |
|
| Q |
122 |
catgtttaagtccatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcgtccagtacttggttgatagaatcatgtgcaatatt |
221 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
6612 |
catgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcgtctagtacttggttgatagaatcaagtgcaatatt |
6513 |
T |
|
| Q |
222 |
gagttctttcacaaggtcatcaacattattacgaccgaagtagtctctgatatcaaccgaagccaacttctcaaaaatcacttgaaaggaagactgaaga |
321 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| || ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6512 |
aagttctttcacaagttcatcaacattgttactactaaagtagtctctgataccaacggaagccaacttctcaataatcacttgaaaggaagactgaaga |
6413 |
T |
|
| Q |
322 |
aatgccccagctaccaactctgccatgatat |
352 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
6412 |
aatgccccggctaccaactctgccatgatat |
6382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 41068482 - 41068378
Alignment:
| Q |
102 |
ttggtctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcgtccagtacttggttg |
201 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||| |||||||||||| || |||||||||| | || ||||||||| |||| || |||||| |
|
|
| T |
41068482 |
ttggtctgcttca--aacaacatgtttaagttcatcaagccaattcttcacatatatgctttggtactgttatagctctgcttcttccaacacatggttg |
41068385 |
T |
|
| Q |
202 |
atagaat |
208 |
Q |
| |
|
||||||| |
|
|
| T |
41068384 |
atagaat |
41068378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 351
Target Start/End: Complemental strand, 41068320 - 41068285
Alignment:
| Q |
316 |
tgaagaaatgccccagctaccaactctgccatgata |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
41068320 |
tgaagaaatgccccagctaccaactctgccatgata |
41068285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 19936185 - 19936232
Alignment:
| Q |
84 |
agaaatctcatctaatagttggtctgcttcataaacaacatgtttaag |
131 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19936185 |
agaaatctcatgtaatagttggtttgcttcataaacaacatgtttaag |
19936232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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