View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7776_high_3 (Length: 317)

Name: NF7776_high_3
Description: NF7776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7776_high_3
NF7776_high_3
[»] chr3 (48 HSPs)
chr3 (1-67)||(9281306-9281372)
chr3 (1-66)||(10228573-10228638)
chr3 (1-67)||(4016615-4016681)
chr3 (1-67)||(44821377-44821443)
chr3 (1-66)||(1334142-1334207)
chr3 (1-66)||(9997724-9997789)
chr3 (1-66)||(10106228-10106293)
chr3 (1-66)||(10232329-10232394)
chr3 (1-67)||(22755836-22755902)
chr3 (1-66)||(36594262-36594328)
chr3 (1-64)||(40415072-40415137)
chr3 (1-62)||(33462855-33462916)
chr3 (1-54)||(43394415-43394468)
chr3 (1-61)||(18013319-18013379)
chr3 (1-63)||(4465031-4465093)
chr3 (1-67)||(5852502-5852568)
chr3 (1-63)||(49818907-49818969)
chr3 (1-62)||(1778511-1778572)
chr3 (1-62)||(4945699-4945760)
chr3 (1-62)||(12948190-12948251)
chr3 (10-67)||(28389115-28389172)
chr3 (1-62)||(29793226-29793287)
chr3 (1-54)||(36178992-36179045)
chr3 (1-61)||(29588525-29588585)
chr3 (2-66)||(32961397-32961461)
chr3 (2-46)||(43370442-43370486)
chr3 (2-62)||(47339932-47339992)
chr3 (1-60)||(53055475-53055534)
chr3 (1-62)||(10819290-10819352)
chr3 (1-63)||(36364610-36364672)
chr3 (1-63)||(38878325-38878387)
chr3 (1-54)||(900944-900997)
chr3 (1-62)||(2643118-2643178)
chr3 (1-62)||(4229036-4229097)
chr3 (1-54)||(9484746-9484799)
chr3 (1-54)||(16434713-16434766)
chr3 (1-54)||(26759628-26759681)
chr3 (1-54)||(29444909-29444962)
chr3 (1-54)||(29720545-29720598)
chr3 (1-62)||(29809494-29809555)
chr3 (1-54)||(34263560-34263613)
chr3 (1-54)||(34555301-34555354)
chr3 (1-54)||(42098483-42098536)
chr3 (1-54)||(48927658-48927711)
chr3 (1-54)||(49076282-49076335)
chr3 (1-54)||(53274851-53274904)
chr3 (2-62)||(3817874-3817934)
chr3 (1-72)||(39557423-39557492)
[»] chr8 (40 HSPs)
chr8 (1-67)||(23849765-23849831)
chr8 (1-63)||(8496735-8496797)
chr8 (1-60)||(29616178-29616237)
chr8 (1-59)||(29917781-29917839)
chr8 (1-63)||(43049118-43049180)
chr8 (1-66)||(14511990-14512055)
chr8 (1-66)||(38036704-38036769)
chr8 (2-66)||(27302013-27302077)
chr8 (3-54)||(11335288-11335339)
chr8 (1-54)||(5777412-5777465)
chr8 (1-62)||(21132778-21132839)
chr8 (5-66)||(32909209-32909270)
chr8 (1-62)||(44362071-44362132)
chr8 (1-66)||(44717445-44717510)
chr8 (6-66)||(17523958-17524018)
chr8 (6-66)||(40645837-40645897)
chr8 (2-66)||(44871482-44871546)
chr8 (2-57)||(1226655-1226709)
chr8 (12-67)||(27505839-27505894)
chr8 (1-67)||(27562936-27563000)
chr8 (1-62)||(14583771-14583833)
chr8 (4-66)||(17496042-17496104)
chr8 (1-66)||(30653510-30653576)
chr8 (1-63)||(37094282-37094344)
chr8 (1-66)||(67245-67310)
chr8 (1-54)||(761700-761753)
chr8 (1-54)||(4960301-4960354)
chr8 (1-62)||(11756928-11756989)
chr8 (1-62)||(13888480-13888541)
chr8 (1-54)||(14378545-14378598)
chr8 (1-54)||(15870325-15870378)
chr8 (1-66)||(20671406-20671471)
chr8 (1-54)||(23437671-23437724)
chr8 (1-54)||(23547218-23547271)
chr8 (1-54)||(25009294-25009347)
chr8 (1-54)||(25866219-25866272)
chr8 (1-54)||(29708711-29708764)
chr8 (1-54)||(42150008-42150061)
chr8 (5-62)||(44039979-44040036)
chr8 (5-62)||(44887565-44887622)
[»] chr6 (20 HSPs)
chr6 (1-67)||(26210897-26210963)
chr6 (1-61)||(35117426-35117486)
chr6 (1-66)||(4889979-4890044)
chr6 (97-157)||(28705952-28706013)
chr6 (1-61)||(10109269-10109329)
chr6 (1-66)||(31948496-31948560)
chr6 (1-63)||(10105961-10106023)
chr6 (1-62)||(17179259-17179317)
chr6 (1-54)||(995713-995766)
chr6 (1-54)||(2141718-2141771)
chr6 (1-54)||(2913047-2913100)
chr6 (1-54)||(6142372-6142425)
chr6 (1-54)||(6188521-6188574)
chr6 (1-62)||(16120731-16120792)
chr6 (1-54)||(17496193-17496246)
chr6 (1-54)||(24798411-24798464)
chr6 (1-54)||(24825315-24825368)
chr6 (1-54)||(30699411-30699464)
chr6 (1-54)||(32541342-32541395)
chr6 (1-54)||(32673898-32673951)
[»] chr1 (35 HSPs)
chr1 (1-67)||(8980824-8980890)
chr1 (1-66)||(5117287-5117352)
chr1 (1-66)||(48312178-48312243)
chr1 (1-67)||(47912431-47912497)
chr1 (1-66)||(3138742-3138807)
chr1 (1-62)||(4489211-4489272)
chr1 (1-62)||(8250700-8250761)
chr1 (1-62)||(23393382-23393443)
chr1 (1-66)||(44963525-44963590)
chr1 (1-66)||(52688681-52688746)
chr1 (1-61)||(40883561-40883620)
chr1 (5-63)||(38786802-38786860)
chr1 (1-63)||(41414353-41414415)
chr1 (1-63)||(43453021-43453083)
chr1 (1-62)||(28490310-28490371)
chr1 (5-62)||(31651758-31651815)
chr1 (3-54)||(49903551-49903602)
chr1 (1-63)||(7075186-7075248)
chr1 (1-63)||(25815678-25815740)
chr1 (1-63)||(41855578-41855639)
chr1 (1-63)||(44741493-44741555)
chr1 (1-62)||(1821486-1821546)
chr1 (1-66)||(2126805-2126870)
chr1 (1-54)||(5606256-5606309)
chr1 (1-54)||(5945915-5945968)
chr1 (1-62)||(8048605-8048666)
chr1 (1-54)||(10648063-10648116)
chr1 (1-67)||(13971608-13971676)
chr1 (1-66)||(26476862-26476927)
chr1 (1-66)||(31745891-31745956)
chr1 (1-66)||(40058820-40058885)
chr1 (1-61)||(43891549-43891607)
chr1 (1-54)||(52749431-52749484)
chr1 (27-67)||(507524-507564)
chr1 (2-66)||(23337958-23338021)
[»] chr7 (26 HSPs)
chr7 (1-66)||(9173185-9173250)
chr7 (1-61)||(48448668-48448728)
chr7 (1-62)||(19327465-19327526)
chr7 (1-66)||(29247777-29247842)
chr7 (1-54)||(38850852-38850905)
chr7 (1-61)||(32972189-32972249)
chr7 (1-61)||(38441963-38442023)
chr7 (1-67)||(41007805-41007871)
chr7 (1-66)||(31496496-31496559)
chr7 (1-61)||(19817485-19817545)
chr7 (1-61)||(46242332-46242392)
chr7 (3-62)||(16806999-16807058)
chr7 (8-66)||(3123995-3124053)
chr7 (1-63)||(18756739-18756801)
chr7 (1-63)||(25273869-25273931)
chr7 (1-63)||(35693682-35693744)
chr7 (1-63)||(38069201-38069263)
chr7 (1-66)||(4620215-4620279)
chr7 (1-54)||(27621156-27621209)
chr7 (1-54)||(32345644-32345697)
chr7 (1-66)||(36404775-36404840)
chr7 (1-62)||(47080767-47080828)
chr7 (1-66)||(47713281-47713346)
chr7 (18-66)||(5842285-5842333)
chr7 (1-61)||(27248699-27248759)
chr7 (1-62)||(40818548-40818611)
[»] chr5 (39 HSPs)
chr5 (1-66)||(26801950-26802015)
chr5 (1-66)||(26809500-26809565)
chr5 (1-67)||(14639563-14639629)
chr5 (2-68)||(41625185-41625251)
chr5 (1-62)||(1918683-1918744)
chr5 (1-66)||(26824527-26824592)
chr5 (1-66)||(30788355-30788420)
chr5 (1-57)||(21031784-21031840)
chr5 (1-67)||(26440502-26440568)
chr5 (1-63)||(36578736-36578798)
chr5 (1-62)||(967344-967405)
chr5 (1-66)||(1831214-1831279)
chr5 (2-67)||(39035711-39035776)
chr5 (1-62)||(39104132-39104193)
chr5 (1-66)||(40316681-40316746)
chr5 (1-66)||(40365737-40365802)
chr5 (1-66)||(41410795-41410860)
chr5 (1-65)||(34347621-34347685)
chr5 (1-63)||(27675690-27675752)
chr5 (1-63)||(32110494-32110556)
chr5 (1-54)||(14355649-14355702)
chr5 (2-67)||(34278614-34278679)
chr5 (1-54)||(40080131-40080184)
chr5 (1-66)||(40796921-40796986)
chr5 (2-66)||(27674368-27674432)
chr5 (1-63)||(2551479-2551541)
chr5 (4-66)||(4152159-4152221)
chr5 (1-63)||(9936740-9936802)
chr5 (5-63)||(10465147-10465205)
chr5 (1-67)||(39925354-39925420)
chr5 (1-63)||(41042689-41042751)
chr5 (1-54)||(14057858-14057911)
chr5 (1-62)||(14140068-14140129)
chr5 (1-54)||(14633157-14633210)
chr5 (1-54)||(20040276-20040329)
chr5 (1-66)||(32473872-32473936)
chr5 (2-66)||(2799783-2799847)
chr5 (2-66)||(2805949-2806013)
chr5 (1-65)||(20502898-20502962)
[»] scaffold0172 (1 HSPs)
scaffold0172 (1-66)||(19584-19649)
[»] chr4 (41 HSPs)
chr4 (1-66)||(1615689-1615754)
chr4 (1-66)||(2806019-2806084)
chr4 (2-67)||(20651561-20651626)
chr4 (1-62)||(29821200-29821261)
chr4 (1-66)||(39260502-39260567)
chr4 (2-66)||(47833992-47834056)
chr4 (1-67)||(30733781-30733848)
chr4 (1-63)||(6520585-6520647)
chr4 (1-63)||(17492817-17492879)
chr4 (2-60)||(52818544-52818602)
chr4 (1-62)||(45064417-45064478)
chr4 (1-66)||(51716681-51716746)
chr4 (2-62)||(23605754-23605814)
chr4 (2-54)||(42862153-42862205)
chr4 (1-63)||(44210299-44210361)
chr4 (1-66)||(1981229-1981294)
chr4 (1-54)||(8525276-8525329)
chr4 (1-66)||(11260852-11260917)
chr4 (1-66)||(24505661-24505726)
chr4 (1-62)||(28898923-28898984)
chr4 (1-62)||(28988246-28988307)
chr4 (1-62)||(37667626-37667687)
chr4 (1-66)||(48079896-48079961)
chr4 (3-63)||(31657208-31657268)
chr4 (14-62)||(37588382-37588430)
chr4 (2-54)||(50685071-50685123)
chr4 (2-61)||(42185425-42185484)
chr4 (1-63)||(24334229-24334291)
chr4 (1-62)||(37164166-37164228)
chr4 (1-63)||(39376719-39376781)
chr4 (1-63)||(51306085-51306147)
chr4 (1-62)||(1377958-1378019)
chr4 (1-66)||(1613066-1613131)
chr4 (1-54)||(3708403-3708456)
chr4 (1-54)||(10384998-10385051)
chr4 (1-54)||(28914518-28914571)
chr4 (1-54)||(40411468-40411521)
chr4 (1-54)||(43447315-43447368)
chr4 (1-54)||(48380906-48380959)
chr4 (1-54)||(55631735-55631788)
chr4 (1-53)||(39171108-39171160)
[»] chr2 (27 HSPs)
chr2 (1-66)||(44022418-44022483)
chr2 (1-67)||(18504622-18504688)
chr2 (1-66)||(7601245-7601310)
chr2 (1-66)||(26436535-26436600)
chr2 (1-57)||(8924596-8924652)
chr2 (2-62)||(41465229-41465289)
chr2 (5-65)||(45001733-45001792)
chr2 (1-63)||(41575712-41575774)
chr2 (1-62)||(5861417-5861478)
chr2 (1-62)||(6729955-6730016)
chr2 (1-62)||(25627173-25627234)
chr2 (1-62)||(37317026-37317087)
chr2 (1-54)||(38963945-38963998)
chr2 (1-62)||(45036513-45036574)
chr2 (17-67)||(14802818-14802868)
chr2 (1-63)||(20682792-20682854)
chr2 (1-63)||(31975385-31975446)
chr2 (1-54)||(1749032-1749085)
chr2 (1-54)||(5096398-5096451)
chr2 (1-62)||(6075275-6075336)
chr2 (1-54)||(11383905-11383958)
chr2 (1-54)||(12209139-12209192)
chr2 (1-54)||(22718403-22718456)
chr2 (1-54)||(37987796-37987849)
chr2 (1-54)||(41436982-41437035)
chr2 (1-62)||(43328653-43328714)
chr2 (1-61)||(15177519-15177579)
[»] scaffold0385 (1 HSPs)
scaffold0385 (1-61)||(2074-2134)
[»] scaffold1248 (1 HSPs)
scaffold1248 (1-63)||(1308-1370)
[»] scaffold0952 (1 HSPs)
scaffold0952 (1-63)||(943-1005)
[»] scaffold0221 (1 HSPs)
scaffold0221 (1-54)||(5526-5579)
[»] scaffold0085 (1 HSPs)
scaffold0085 (33-65)||(43672-43704)


Alignment Details
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9281372 - 9281306
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||||||||||| ||||||||||||    
T  9281372 caaattttcataattttttctaatagattattaaagatatttaagttcaaaattatgcattgacata 9281306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10228638 - 10228573
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||||||| ||||||  |||||||||||||||||| || |||||||||||    
T  10228638 caaattttcataattttttctaatatattattcaagatatttaagttcaaagttatgcattgacat 10228573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4016615 - 4016681
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||| |||||||| ||||| ||||    
T  4016615 caaattttcataattttttctaatagattattaaagatatttaagtttaaaattgttcattggcata 4016681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 44821443 - 44821377
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| ||||| || ||||||||||||    
T  44821443 caaattttcataattttttctaatatattattcaagatatttaagctcaaagttatgcattgacata 44821377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1334207 - 1334142
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||| ||||||||||||||| ||||||  |||||||||||| |||||||| |||||||||||    
T  1334207 caaatttttataattttttctaatatattatttaagatatttaagctcaaaattatgcattgacat 1334142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9997789 - 9997724
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||||||||| || |||||||||||    
T  9997789 caaattttcataatttttcctaatatattattcaagatatttaagttcaaagttatgcattgacat 9997724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10106293 - 10106228
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||||||||| || |||||||||||    
T  10106293 caaattttcataatttttcctaatatattattcaagatatttaagttcaaagttatgcattgacat 10106228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10232394 - 10232329
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||||||||| || |||||||||||    
T  10232394 caaattttcataatttttcctaatatattattcaagatatttaagttcaaagttatgcattgacat 10232329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22755836 - 22755902
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||||||||||||||||||||||  ||| |  |||||||||||| ||||||||||| |||||||||    
T  22755836 caaattttcataattttttctaatagattgttcaagatatttaagatcaaaattgtgtattgacata 22755902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36594328 - 36594262
Alignment:
Q  1 caaattttcataatttttt-ctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||| ||||| ||||||  |||||||||||| |||||||| |||||||||||    
T  36594328 caaattttcataatttttttctaatatattattcaagatatttaagctcaaaattatgcattgacat 36594262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40415072 - 40415137
Alignment:
Q  1 caaattttcataattttttctaatgta--ttataaaagatatttaagttcaaaattgtgcattgac 64  Q
    |||||||||||||||||||||||| ||  |||| ||||||||||||||| |||||| |||||||||    
T  40415072 caaattttcataattttttctaatatattttattaaagatatttaagtttaaaattatgcattgac 40415137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33462855 - 33462916
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||||||||||||| || ||||||  |||||||||||| |||||||| |||||||    
T  33462855 caaattttcataattttttcttatatattattcaagatatttaagctcaaaattatgcattg 33462916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43394468 - 43394415
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| ||||||||    
T  43394468 caaattttcataattttttctaatatattattcaagatatttaagctcaaaatt 43394415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18013379 - 18013319
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| || ||||| ||||||    
T  18013379 caaattttcataattttttctaatatattattcaagatatttaagctctaaattatgcatt 18013319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4465031 - 4465093
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||||| |||||||||  ||||||  |||||||||||| |||||||| ||||||||    
T  4465031 caaattttcataactttttctaacatattattcaagatatttaagctcaaaattatgcattga 4465093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 5852568 - 5852502
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    |||||||| |||||||||||||||  ||||| ||||||||||||| |||||||| |  |||||||||    
T  5852568 caaatttttataattttttctaatagattattaaagatatttaagatcaaaattataaattgacata 5852502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 49818907 - 49818969
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| ||||||||    
T  49818907 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaattatgcattga 49818969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1778511 - 1778572
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| |||||||    
T  1778511 caaattttcatgattttttctaacatattatttaagatatttaagctcaaaattatgcattg 1778572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4945760 - 4945699
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| |||||||    
T  4945760 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaattatgcattg 4945699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12948190 - 12948251
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  |||||||| |||||||    
T  12948190 caaattttcataattttttccaatatattattcaagatatttaaactcaaaattatgcattg 12948251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 28389172 - 28389115
Alignment:
Q  10 ataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    |||||||||||||||  ||||| ||||||||||||| | ||| |||||||||||||||    
T  28389172 ataattttttctaatagattattaaagatatttaagattaaagttgtgcattgacata 28389115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29793287 - 29793226
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  |||||||| |||||||    
T  29793287 caaattttcataattttttccaatatattatttaagatatttaaactcaaaattatgcattg 29793226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36179045 - 36178992
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||||||| ||||||  |||||||||||  ||||||||    
T  36179045 caaattttcataattttttctaatatattattcaagatatttaaactcaaaatt 36178992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29588525 - 29588585
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    |||||||||||||||| || |||| ||||||  |||||||||||| |||||||| ||||||    
T  29588525 caaattttcataatttcttttaatatattattcaagatatttaagctcaaaattatgcatt 29588585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 32961397 - 32961461
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||||||  ||||||  || ||||||||  |||||||| |||||||||||    
T  32961397 aaattttcataattttttctaacatattattcaaaatatttaaactcaaaattatgcattgacat 32961461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 43370442 - 43370486
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagt 46  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||    
T  43370442 aaattttcataattttttctaatatattattcaagatatttaagt 43370486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 47339992 - 47339932
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||||||||||||||| || |||  |||||||||||  |||||||| |||||||    
T  47339992 aaattttcataattttttctaatatactattcaagatatttaaactcaaaattatgcattg 47339932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 53055534 - 53055475
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcat 60  Q
    ||||||||||||||||||| |||| ||||||  |||||||||||| | |||||| |||||    
T  53055534 caaattttcataattttttttaatatattattcaagatatttaagcttaaaattatgcat 53055475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10819352 - 10819290
Alignment:
Q  1 caaattttcataatttttt-ctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||| |||||| ||||| |||||  ||| |||||||| |||||||||||||||||    
T  10819352 caaattttcatattttttttctaatatattactaaaaatatttaatttcaaaattgtgcattg 10819290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36364672 - 36364610
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| | ||||||    
T  36364672 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaattatacattga 36364610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 38878387 - 38878325
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||  |||||||    
T  38878387 caaattttcataattttttccaatatattattcaagatatttaaactcaaaattacgcattga 38878325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 900997 - 900944
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  900997 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 900944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2643178 - 2643118
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||||||||||| |||  ||||||  |||||||||||| |||||||| |||||||    
T  2643178 caaattttcataatttttt-taacatattattcaagatatttaagctcaaaattatgcattg 2643118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4229097 - 4229036
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||| ||||||||||||||  ||||||  |||||||||||  |||||||| |||||||    
T  4229097 caaatttttataattttttctaacatattattcaagatatttaaactcaaaattatgcattg 4229036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9484746 - 9484799
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  9484746 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 9484799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 16434766 - 16434713
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  16434766 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 16434713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 26759628 - 26759681
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||||||  ||||||  |||||||||||  ||||||||    
T  26759628 caaattttcataattttttctaacatattattcaagatatttaaactcaaaatt 26759681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29444962 - 29444909
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||  ||| ||||||  ||||||||||| |||||||||    
T  29444962 caaattttcataatttttttcaatatattattcaagatatttaaattcaaaatt 29444909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29720545 - 29720598
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  29720545 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 29720598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29809494 - 29809555
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| ||||||| |||  ||||||  |||||||||||| |||||||| |||||||    
T  29809494 caaattttcatgattttttataacatattattcaagatatttaagctcaaaattatgcattg 29809555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34263613 - 34263560
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  34263613 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 34263560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34555301 - 34555354
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  34555301 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 34555354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42098536 - 42098483
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  42098536 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 42098483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48927711 - 48927658
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  48927711 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 48927658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 49076335 - 49076282
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  49076335 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 49076282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 53274904 - 53274851
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  53274904 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 53274851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 3817874 - 3817934
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||| ||||||||||||||| || |||  |||||||||||  |||||||| |||||||    
T  3817874 aaatttttataattttttctaatatactattcaagatatttaaactcaaaattatgcattg 3817934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 39557492 - 39557423
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacatagtcaa 72  Q
    |||||||||||||||||||  ||| |||||| ||||||||||||  |||||||| | |||| ||| ||||||    
T  39557492 caaattttcataatttttt--aatatattattaaagatatttaaaatcaaaattatacattaacagagtcaa 39557423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23849765 - 23849831
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||||||| ||| ||||||||||||    
T  23849765 caaattttcataattttttctaataaattattaaagatatttaagttcaatattatgcattgacata 23849831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 8496797 - 8496735
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| |||||||| ||||||||    
T  8496797 caaattttcataattttttctaatatattattcaagatatttaagctcaaaattatgcattga 8496735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29616237 - 29616178
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcat 60  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| |||||||| |||||    
T  29616237 caaattttcataattttttctaatatattattcaagatatttaagctcaaaattatgcat 29616178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29917839 - 29917781
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgca 59  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| |||||||| ||||    
T  29917839 caaattttcataattttttctaatatattattcaagatatttaagatcaaaattatgca 29917781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43049180 - 43049118
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||||||  ||||||  |||||||||||| |||||||| ||||||||    
T  43049180 caaattttcataattttttctaacatattattcaagatatttaagctcaaaattatgcattga 43049118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14511990 - 14512055
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||| ||||||||||||||| ||||||  |||||||||||| ||||| || |||||||||||    
T  14511990 caaatttttataattttttctaatatattattcaagatatttaagctcaaagttatgcattgacat 14512055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38036769 - 38036704
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||| ||||| || |||||||||||    
T  38036769 caaattttcataatttttcctaatatattattcaagatatttaagctcaaagttatgcattgacat 38036704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 27302013 - 27302077
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| |||| ||||||  |||||||||||  |||||||| |||||||||||    
T  27302013 aaattttcataattttttataatatattattcaagatatttaaactcaaaattatgcattgacat 27302077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 11335339 - 11335288
Alignment:
Q  3 aattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||| |||||||||||||||  ||||||||||||||||||| ||||||||    
T  11335339 aatttttataattttttctaataaattataaaagatatttaagatcaaaatt 11335288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5777465 - 5777412
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||||||| ||||||  |||||||||||  ||||||||    
T  5777465 caaattttcataattttttctaatatattattcaagatatttaaactcaaaatt 5777412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 21132839 - 21132778
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  |||||||| |||||||    
T  21132839 caaattttcataattttttccaatatattattcaagatatttaaactcaaaattatgcattg 21132778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 32909209 - 32909270
Alignment:
Q  5 ttttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||| ||||| ||||||  |||||||||||| ||||| || |||||||||||    
T  32909209 ttttcataatttttcctaatatattattcaagatatttaagctcaaagttatgcattgacat 32909270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44362071 - 44362132
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| |||||||    
T  44362071 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaattatgcattg 44362132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44717445 - 44717510
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||| |||| ||||||  | |||||||||| |||||||| || ||||||||    
T  44717445 caaattttcataattttttataatatattattcatgatatttaagctcaaaattatgaattgacat 44717510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 17523958 - 17524018
Alignment:
Q  6 tttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||| ||| |||| ||||||  |||||||||||| |||||||| |||||||||||    
T  17523958 tttcataattatttttaatatattattcaagatatttaagctcaaaattatgcattgacat 17524018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 40645837 - 40645897
Alignment:
Q  6 tttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||| ||||||  |||||||||||| || || || |||||||||||    
T  40645837 tttcataattttttctaatatattattcaagatatttaagctcgaagttatgcattgacat 40645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 44871482 - 44871546
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||||||  ||||||  || ||||||||  |||||||| |||||||||||    
T  44871482 aaattttcataattttttctaacatattattcaaaatatttaaactcaaaattatgcattgacat 44871546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 1226655 - 1226709
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtg 57  Q
    ||||||||||||||||| ||| |  ||||| |||||||||||||||||||||||||    
T  1226655 aaattttcataattttt-ctattagattattaaagatatttaagttcaaaattgtg 1226709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 27505839 - 27505894
Alignment:
Q  12 aattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||||||||||| | |||| |||||||||||| ||||||| |||| |||||||||    
T  27505839 aattttttctaatatgttattaaagatatttaaattcaaaactgtgtattgacata 27505894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27563000 - 27562936
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    |||||||||||| ||||||  |||  | ||| ||||||||||||||||||||||||||||| |||||    
T  27563000 caaattttcatattttttt--aatagaatattaaagatatttaagttcaaaattgtgcatttacata 27562936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14583833 - 14583771
Alignment:
Q  1 caaattttcataatttttt-ctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| ||||||| ||||  |||||| ||||||||||||| |||||||| |||||||    
T  14583833 caaattttcatgatttttttctaacatattattaaagatatttaagctcaaaattatgcattg 14583771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 17496042 - 17496104
Alignment:
Q  4 attttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||| ||| ||||||||||||  |||| |||| |||||||| | ||||||||||||||||||    
T  17496042 atttttatagttttttctaatggtttattaaaggtatttaagattaaaattgtgcattgacat 17496104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30653510 - 30653576
Alignment:
Q  1 caaattttcataa-ttttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||| ||||||||||| ||||||  |||||||||||  | |||||| |||||||||||    
T  30653510 caaattttcataagttttttctaatatattatttaagatatttaatctgaaaattatgcattgacat 30653576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 37094282 - 37094344
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||| ||| |||||||||||  ||||||  |||||||||||| |||||||| ||||||||    
T  37094282 caaatttccatgattttttctaacatattattcaagatatttaagctcaaaattatgcattga 37094344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 67245 - 67310
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||| ||||||||||||||  || ||||||  |||||||||||| ||||| || |||||||||||    
T  67245 caaatattcataattttttcatatatattattcaagatatttaagctcaaagttatgcattgacat 67310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 761700 - 761753
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  761700 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 761753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4960301 - 4960354
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| ||||||||    
T  4960301 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaatt 4960354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11756928 - 11756989
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| |||||||||||  ||||||  |||||||| ||| |||||||| |||||||    
T  11756928 caaattttcatgattttttctaacatattattcaagatattcaagctcaaaattatgcattg 11756989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 13888541 - 13888480
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||| | |||||||||||||||  ||||  |||| |||||||| ||||||||||||||||    
T  13888541 caaattattataattttttctaatagattagtaaagttatttaagatcaaaattgtgcattg 13888480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 14378598 - 14378545
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  14378598 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 14378545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15870325 - 15870378
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  15870325 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 15870378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20671406 - 20671471
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||||||| ||| ||  || ||||||||| ||||||   |||||||||||    
T  20671406 caaattttcataattttttctaatatataattcaaaatatttaagctcaaaaccatgcattgacat 20671471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23437724 - 23437671
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  23437724 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 23437671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23547218 - 23547271
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  23547218 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 23547271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25009294 - 25009347
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  25009294 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 25009347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25866219 - 25866272
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| ||||||||    
T  25866219 caaattttcattattttttctaacatattattcaagatatttaagctcaaaatt 25866272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29708711 - 29708764
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  29708711 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 29708764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42150061 - 42150008
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  42150061 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 42150008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 44039979 - 44040036
Alignment:
Q  5 ttttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||||||| |||| ||||||  |||||||||||  |||||||| |||||||    
T  44039979 ttttcataattttttataatatattattcaagatatttaaactcaaaattatgcattg 44040036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 44887622 - 44887565
Alignment:
Q  5 ttttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||||||| |||| ||||||  |||||||||| | |||||||| |||||||    
T  44887622 ttttcataattttttataatatattattcaagatatttatgctcaaaattatgcattg 44887565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26210897 - 26210963
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||| || |||| ||||    
T  26210897 caaattttcataattttttctaatatattattaaagatatttaagttcaaaattatgtattggcata 26210963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 35117426 - 35117486
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| |||||||| ||||||    
T  35117426 caaattttcataattttttctaatatattatccaagatatttaagctcaaaattatgcatt 35117486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4890044 - 4889979
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||| | | ||||||  |||||||||||| |||||||| |||||||||||    
T  4890044 caaattttcataattttttcgagtatattattcaagatatttaagctcaaaattatgcattgacat 4889979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 28705952 - 28706013
Alignment:
Q  97 tatttctcttttta-cctttgattctgttttgtgattcttcgaatttggagtttaggttttt 157  Q
    |||||||||||||  ||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  28705952 tatttctctttttttcctttgattatgttttgtgattcctcgaatttggaggttaggttttt 28706013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10109329 - 10109269
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| ||||| || ||||||    
T  10109329 caaattttcataattttttctaatatattattcaagatatttaagctcaaagttatgcatt 10109269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31948560 - 31948496
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||||||| ||||||  |||||| ||||| ||| |||| |||||||||||    
T  31948560 caaattttcataattttttctaatatattattcaagata-ttaagctcagaattatgcattgacat 31948496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10105961 - 10106023
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||||| | ||||||  |||||||| ||  |||||||| ||||||||    
T  10105961 caaattttcataattttttctagtatattattcaagatattaaatctcaaaattatgcattga 10106023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17179317 - 17179259
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||||  |||||||||| |||| |||| |||||||||||||| ||||||||||||    
T  17179317 caaattttcata--tttttctaatatattttaaa-gatatttaagttcacaattgtgcattg 17179259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 995713 - 995766
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  995713 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 995766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2141718 - 2141771
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  2141718 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 2141771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2913047 - 2913100
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  2913047 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 2913100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6142425 - 6142372
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  6142425 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 6142372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6188574 - 6188521
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  6188574 caaattttcataattttttccaatatattatttaagatatttaaactcaaaatt 6188521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16120792 - 16120731
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||| |||||||||||||||  ||||| |||| |||||||  ||||||||||| ||||    
T  16120792 caaatttttataattttttctaatagattattaaagttatttaatatcaaaattgtgtattg 16120731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 17496246 - 17496193
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  17496246 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 17496193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24798464 - 24798411
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  24798464 caaattttcataattttttccaatttattattcaagatatttaaactcaaaatt 24798411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24825315 - 24825368
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  24825315 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 24825368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30699411 - 30699464
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||||||| ||||||   ||||||||||  ||||||||    
T  30699411 caaattttcataattttttctaatatattattctagatatttaaactcaaaatt 30699464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32541395 - 32541342
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  32541395 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 32541342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32673898 - 32673951
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||||||  ||||||  ||||| |||||| ||||||||    
T  32673898 caaattttcataattttttctaacatattattcaagatgtttaaggtcaaaatt 32673951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8980824 - 8980890
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||||||||||||||||||||||  ||||| ||| ||||||||||||||||||||| |||||||||    
T  8980824 caaattttcataattttttctaatagattattaaaaatatttaagttcaaaattgtggattgacata 8980890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5117352 - 5117287
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| ||||| || |||||||||||    
T  5117352 caaattttcataattttttctaatatattattcaagatatttaagctcaaagttatgcattgacat 5117287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 48312178 - 48312243
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||||||| ||||||  || ||||||||| |||||||| |||||||||||    
T  48312178 caaattttcataattttttctaatatattattcaaaatatttaagctcaaaattatgcattgacat 48312243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 47912431 - 47912497
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||||||||||||||||| |||| ||||||  || ||||||||| |||||||| ||||||||||||    
T  47912431 caaattttcataattttttataatatattattcaaaatatttaagctcaaaattatgcattgacata 47912497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3138742 - 3138807
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||||| | ||||||  |||||||||||||| |||||| || ||||||||    
T  3138742 caaattttcataattttttctagtatattattcaagatatttaagtttaaaattatgtattgacat 3138807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4489211 - 4489272
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||||||||  ||||||  |||||||||||| |||||||| |||||||    
T  4489211 caaattttcataattttttctaacatattattcaagatatttaagctcaaaattatgcattg 4489272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8250761 - 8250700
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||||||||| ||||||  |||||||||||  |||||||| |||||||    
T  8250761 caaattttcataattttttctaatatattattcaagatatttaaactcaaaattatgcattg 8250700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23393382 - 23393443
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||||||||  ||||||  |||||||||||| |||||||| |||||||    
T  23393382 caaattttcataattttttctaacatattattcaagatatttaagctcaaaattatgcattg 23393443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44963590 - 44963525
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| ||||| || || ||||||||    
T  44963590 caaattttcataattttttctaatatattattcaagatatttaagctcaaagttatgtattgacat 44963525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 52688681 - 52688746
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||||||| ||||||  || ||||||||| ||||| || |||||||||||    
T  52688681 caaattttcataattttttctaatatattattcaatatatttaagctcaaagttatgcattgacat 52688746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 40883561 - 40883620
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    ||||||||||||||||||| |||| ||||||  ||||||||||||||||||||| ||||||    
T  40883561 caaattttcataatttttt-taatatattattcaagatatttaagttcaaaattatgcatt 40883620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 38786860 - 38786802
Alignment:
Q  5 ttttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||| |||||| ||||||||||||  |||||||| || |||||    
T  38786860 ttttcataattttttctaatatattattaaagatatttaaactcaaaattatgtattga 38786802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41414353 - 41414415
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| ||||||||    
T  41414353 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaattatgcattga 41414415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43453083 - 43453021
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||| ||||||||||||||| ||||||  |||||||||||  |||||||| ||||||||    
T  43453083 caaatttttataattttttctaatatattattcaagatatttaaactcaaaattatgcattga 43453021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28490310 - 28490371
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| |||||||    
T  28490310 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaattatgcattg 28490371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 31651815 - 31651758
Alignment:
Q  5 ttttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||||||| |||| ||||||  |||||||||||| |||||||| |||||||    
T  31651815 ttttcataattttttataatatattattcaagatatttaagctcaaaattatgcattg 31651758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 49903602 - 49903551
Alignment:
Q  3 aattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||||| ||||||  ||||||| |||| ||||||||    
T  49903602 aattttcataattttttctaatatattattcaagatatgtaagctcaaaatt 49903551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7075248 - 7075186
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||  |||||||    
T  7075248 caaattttcataattttttccaatatattattcaagatatttaaactcaaaattacgcattga 7075186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 25815678 - 25815740
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||| ||||||||||||||| || |||  |||||||||||  |||||||| ||||||||    
T  25815678 caaatttttataattttttctaatatactattcaagatatttaacctcaaaattatgcattga 25815740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 41855639 - 41855578
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| ||||||||    
T  41855639 caaattttcatgattttttctaacatattattcaagatatttaag-tcaaaattatgcattga 41855578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 44741493 - 44741555
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||  |||||||    
T  44741493 caaattttcataattttttccaatatattattcaagatatttaaactcaaaattacgcattga 44741555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1821546 - 1821486
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||| |||||||| ||||| ||||||  |||||||||||| |||||||| |||||||    
T  1821546 caaattttcgtaattttt-ctaatatattattcaagatatttaagctcaaaattatgcattg 1821486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2126805 - 2126870
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||| ||||||||||||||| ||| ||  || ||||||||||| |||||| |||||| ||||    
T  2126805 caaatttttataattttttctaatatataatttaaaatatttaagtttaaaattatgcatttacat 2126870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5606309 - 5606256
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  5606309 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 5606256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5945915 - 5945968
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  5945915 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 5945968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8048666 - 8048605
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||| | |||||||    
T  8048666 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaaatatgcattg 8048605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10648116 - 10648063
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    ||||||||||||||||||| |||| ||||||  |||||||||||  ||||||||    
T  10648116 caaattttcataattttttttaatatattattcaagatatttaaactcaaaatt 10648063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13971676 - 13971608
Alignment:
Q  1 caaattttcataatttttt--ctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    |||||||||||||||||||  |||||  ||||| |||||||||||| ||  ||||||||||||| ||||    
T  13971676 caaattttcataattttttttctaatagattattaaagatatttaaatttgaaattgtgcattggcata 13971608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26476927 - 26476862
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||  |||| ||||||  |||||||||||  |||||||| || ||||||||    
T  26476927 caaattttcataatttttcataatatattattcaagatatttaaactcaaaattatgtattgacat 26476862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 31745891 - 31745956
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||| |||| ||||||  |||||||||||  | |||||| || ||||||||    
T  31745891 caaattttcataattttttataatatattattcaagatatttaacctaaaaattatggattgacat 31745956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40058885 - 40058820
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||||||| ||||||  ||  |||||||  ||||| || |||||||||||    
T  40058885 caaattttcataattttttctaatatattattcaaagtatttaaactcaaagttatgcattgacat 40058820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 43891549 - 43891607
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    |||||||||||||||||||  |||  | ||| |||||||||||||||||||| ||||||||    
T  43891549 caaattttcataatttttt--aatagaatattaaagatatttaagttcaaaaatgtgcatt 43891607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 52749431 - 52749484
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  52749431 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 52749484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 507524 - 507564
Alignment:
Q  27 attataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||| ||||||||||||| |||||||||| ||||||||||    
T  507524 attattaaagatatttaagatcaaaattgtacattgacata 507564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 23337958 - 23338021
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||  ||| ||||||  |||||||||||  |||||||| |||||||||||    
T  23337958 aaattttcataatttttta-aatatattattcaagatatttaaactcaaaattatgcattgacat 23338021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9173250 - 9173185
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||| |||| ||||||  ||||||||||||||||||||| |||||||||||    
T  9173250 caaattttcataattttttataatatattattcaagatatttaagttcaaaattatgcattgacat 9173185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 48448668 - 48448728
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| |||||||| ||||||    
T  48448668 caaattttcataattttttctaatatattattcaagatatttaagctcaaaattatgcatt 48448728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 19327465 - 19327526
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| |||||||||||  ||||||  ||||||||||||||||||||| |||||||    
T  19327465 caaattttcatgattttttctaacatattattcaagatatttaagttcaaaattatgcattg 19327526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29247777 - 29247842
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||  |||| ||||||  |||||||||||||||||| |||| |||||||||    
T  29247777 caaattttcataatttttcttaatatattattcaagatatttaagttcaaagttgtacattgacat 29247842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38850852 - 38850905
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| ||||||||    
T  38850852 caaattttcataattttttctaatatattattcaagatatttaagctcaaaatt 38850905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 32972249 - 32972189
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    |||||||||||||||||||||||  ||||||  |||||||||||| |||||||| ||||||    
T  32972249 caaattttcataattttttctaacatattattcaagatatttaagctcaaaattatgcatt 32972189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 38441963 - 38442023
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    ||||||||||||||||||| |||| ||||||  |||||||||||| |||||||| ||||||    
T  38441963 caaattttcataattttttttaatatattattcaagatatttaagctcaaaattatgcatt 38442023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 41007871 - 41007805
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||||||||||||||||| |||| ||||||  |||||||||||  |||||||| | ||||||||||    
T  41007871 caaattttcataattttttataatatattattcaagatatttaaactcaaaattatacattgacata 41007805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31496559 - 31496496
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| | ||||  ||||||||||||||||||||| |||||||||||    
T  31496559 caaattttcataattttt-ctaatat-ttattcaagatatttaagttcaaaattatgcattgacat 31496496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19817485 - 19817545
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    |||||||||||||||||||||||| ||||||  |||||||||||  | |||||| ||||||    
T  19817485 caaattttcataattttttctaatatattattcaagatatttaaacttaaaattatgcatt 19817545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 46242392 - 46242332
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    ||||||||||||||||||||| || ||||||  |||||||||||| ||||| || ||||||    
T  46242392 caaattttcataattttttctgatatattatttaagatatttaagctcaaagttatgcatt 46242332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 16807058 - 16806999
Alignment:
Q  3 aattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||| ||| ||||||  |||||||||||  |||||||| |||||||    
T  16807058 aattttcataattttttccaatatattattcaagatatttaaactcaaaattatgcattg 16806999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 3124053 - 3123995
Alignment:
Q  8 tcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||| ||||||  |||||||||||| |||||  | |||||||||||    
T  3124053 tcataattttttctaatatattattcaagatatttaagctcaaagatatgcattgacat 3123995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 18756739 - 18756801
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||||||| ||||||  || ||| ||||  |||||||| ||||||||    
T  18756739 caaattttcataattttttctaatatattattcaaaatagttaaactcaaaattatgcattga 18756801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25273931 - 25273869
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||  |||||||    
T  25273931 caaattttcataattttttccaatatattattcaagatatttaaactcaaaattacgcattga 25273869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 35693744 - 35693682
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||  |||||||    
T  35693744 caaattttcataattttttccaatatattattcaagatatttaaactcaaaattacgcattga 35693682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 38069201 - 38069263
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||  |||||||    
T  38069201 caaattttcataattttttccaatatattatttaagatatttaaactcaaaattacgcattga 38069263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4620215 - 4620279
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||| ||||||||||||||| ||||||  |||||||||||  |||||||| |||||| ||||    
T  4620215 caaatttt-ataattttttctaatatattattcaagatatttaaactcaaaattatgcattaacat 4620279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27621209 - 27621156
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  27621209 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 27621156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32345697 - 32345644
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  32345697 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 32345644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36404840 - 36404775
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||  |||||||||||||| ||||||  || ||||||||| ||||| || |||||||||||    
T  36404840 caaatttttctaattttttctaatatattattcaatatatttaagctcaaagttatgcattgacat 36404775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 47080767 - 47080828
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||| |||||||||||||||  ||||  |||| |||||||| |||||||| |||||||    
T  47080767 caaatttttataattttttctaatagattagtaaagttatttaagatcaaaattatgcattg 47080828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 47713346 - 47713281
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||| |||||||||||| |||| ||||||  | |||||||||| ||||| || |||||||||||    
T  47713346 caaattgtcataattttttataatatattattcacgatatttaagctcaaagttatgcattgacat 47713281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 5842285 - 5842333
Alignment:
Q  18 ttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||| ||||||  |||||||||||| |||||||| |||||||||||    
T  5842285 ttctaatatattattcaagatatttaagctcaaaattatgcattgacat 5842333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27248759 - 27248699
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    |||||||| |||||||||||||||  ||||   ||| |||||||| |||||||||||||||    
T  27248759 caaatttttataattttttctaatagattagttaagttatttaagatcaaaattgtgcatt 27248699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40818611 - 40818548
Alignment:
Q  1 caaattttcataattttttctaatgtattat--aaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||||||||| ||||||  || | ||||| ||| |||||||| |||||||    
T  40818611 caaattttcataattttttctaatatattattcaagatatattgaagctcaaaattatgcattg 40818548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26802015 - 26801950
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||||||| ||||||  |||||||||||||||||| || |||||||||||    
T  26802015 caaattttcataattttttctaatatattattcaagatatttaagttcaaagttatgcattgacat 26801950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26809565 - 26809500
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||||||| ||||||  |||||||||||||||||| || |||||||||||    
T  26809565 caaattttcataattttttctaatatattattcaagatatttaagttcaaagttatgcattgacat 26809500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 14639629 - 14639563
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| ||||| || ||||||||||||    
T  14639629 caaattttcataattttttctaatatattattcaagatatttaagctcaaagttatgcattgacata 14639563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 41625251 - 41625185
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacatag 68  Q
    ||||||||||||||||||| |||  ||||| |||||||||||| ||||||||||||||||| |||||    
T  41625251 aaattttcataattttttcgaataaattattaaagatatttaaattcaaaattgtgcattggcatag 41625185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1918744 - 1918683
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| |||||||| |||||||    
T  1918744 caaattttcataattttttctaatatattattcaagatatttaaggtcaaaattatgcattg 1918683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26824592 - 26824527
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||||||||| || |||||||||||    
T  26824592 caaattttcataatttttactaatatattattcaagatatttaagttcaaagttatgcattgacat 26824527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30788355 - 30788420
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||| |||| ||||||  |||||||||||| |||||||| |||||||||||    
T  30788355 caaattttcataattttttttaatatattattcaagatatttaagctcaaaattatgcattgacat 30788420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21031784 - 21031840
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtg 57  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  21031784 caaatttttataattttttctaatatattattaaagatatttaagatcaaaattgtg 21031840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26440568 - 26440502
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||||||||||||||||| ||||  || |||||| ||||||||||||||| |||| ||||||||||    
T  26440568 caaattttcataattttttttaatagataataaaaaatatttaagttcaaagttgtacattgacata 26440502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 36578736 - 36578798
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||||||||||||||||  |||||  |||||||||||| | |||||||||||||||    
T  36578736 caaattttcataattttttctaatagattattcaagatatttaagatgaaaattgtgcattga 36578798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 967344 - 967405
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||| ||||||||||||||  ||||||  ||||||||||||||||||||| |||||||    
T  967344 caaatttttataattttttctaacttattattcaagatatttaagttcaaaattatgcattg 967405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1831214 - 1831279
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||| ||||| || |||||||||||    
T  1831214 caaattttcataatttttcctaatatattattcaagatatttaagctcaaagttatgcattgacat 1831279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 39035711 - 39035776
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    |||||||||||||||||| |||| ||||||  |||||||||||| |||||||| | ||||||||||    
T  39035711 aaattttcataattttttataatatattattcaagatatttaagctcaaaattattcattgacata 39035776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39104193 - 39104132
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||||||||| ||||||  || ||||||||| |||||||| |||||||    
T  39104193 caaattttcataattttttctaatatattattcaatatatttaagctcaaaattatgcattg 39104132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40316681 - 40316746
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||| ||||| || |||||||||||    
T  40316681 caaattttcataatttttcctaatatattattcaagatatttaagctcaaagttatgcattgacat 40316746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40365802 - 40365737
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  || ||||||||||||||| || |||||||||||    
T  40365802 caaattttcataatttttcctaatatattattcaaaatatttaagttcaaagttatgcattgacat 40365737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41410860 - 41410795
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||| ||||| || |||||||||||    
T  41410860 caaattttcataatttttcctaatatattattcaagatatttaagctcaaagttatgcattgacat 41410795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34347621 - 34347685
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgaca 65  Q
    |||||||||||||||||||||||| ||||||  |||||| ||||| ||||| || ||||||||||    
T  34347621 caaattttcataattttttctaatatattattcaagatacttaagctcaaagttatgcattgaca 34347685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27675690 - 27675752
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| ||||||||    
T  27675690 caaattttcatgattttttctaacatattatttaagatatttaagctcaaaattatgcattga 27675752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32110556 - 32110494
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||||||| ||||||  |||||||| ||| ||||| || ||||||||    
T  32110556 caaattttcataattttttctaatatattattcaagatattgaagctcaaagttatgcattga 32110494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14355649 - 14355702
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    ||||||||||||||||||| |||| ||||||  |||||||||||| ||||||||    
T  14355649 caaattttcataattttttataatatattatttaagatatttaagctcaaaatt 14355702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 34278679 - 34278614
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||||| ||||||||||| |||  ||||| ||| ||||||||||| |||||||| ||||||||||    
T  34278679 aaatttttataattttttcaaatagattattaaatatatttaagtttaaaattgtacattgacata 34278614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40080131 - 40080184
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||||||  ||||||  |||||||||||| ||||||||    
T  40080131 caaattttcataattttttctaacatattattcaagatatttaagctcaaaatt 40080184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40796986 - 40796921
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||| |||||| ||||| ||||||  ||| |||||||||||||| || |||||||||||    
T  40796986 caaattttcatgatttttcctaatatattattcaaggtatttaagttcaaagttatgcattgacat 40796921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 27674368 - 27674432
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||| |||||  |||||  |||||||||||| ||||| || |||||||||||    
T  27674368 aaattttcataatttttcctaatacattattcaagatatttaagctcaaagttatgcattgacat 27674432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2551541 - 2551479
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||| ||||||||||||| |||| ||||||  |||||||||||  |||||||| ||||||||    
T  2551541 caaatattcataattttttttaatatattattcaagatatttaaactcaaaattatgcattga 2551479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 4152221 - 4152159
Alignment:
Q  4 attttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||||  ||||||  || ||||||||| |||||| | |||||||||||    
T  4152221 attttcataattttttctaacatattattcaatatatttaagctcaaaaatatgcattgacat 4152159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9936802 - 9936740
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||  |||||||    
T  9936802 caaattttcataattttttccaatatattattcaagatatttaaactcaaaattacgcattga 9936740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 10465205 - 10465147
Alignment:
Q  5 ttttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||| |||||||||||  ||||||  |||||||||||| |||||||| ||||||||    
T  10465205 ttttcatgattttttctaacatattattcaagatatttaagctcaaaattatgcattga 10465147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 39925354 - 39925420
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    |||||||| ||||||||||| ||  ||||||  |||||||||||  |||||||| ||||||||||||    
T  39925354 caaatttttataattttttccaacatattattcaagatatttaaactcaaaattatgcattgacata 39925420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 41042751 - 41042689
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||| |||||||||||  ||||||  || ||||||||| |||||||| ||||||||    
T  41042751 caaattttcatgattttttctaacatattattcaatatatttaagctcaaaattatgcattga 41042689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14057858 - 14057911
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  14057858 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 14057911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14140068 - 14140129
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||  |||||||| |||||||    
T  14140068 caaattttcatgattttttctaacatattattcaagatatttaaactcaaaattatgcattg 14140129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14633157 - 14633210
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  14633157 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 14633210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20040329 - 20040276
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||| ||||| ||| ||||||  ||||||||||| |||||||||    
T  20040329 caaattttcataatcttttccaatatattattcaagatatttaaattcaaaatt 20040276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32473936 - 32473872
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||| |||| ||||||  |||||||||| | |||||||| |||||| ||||    
T  32473936 caaattttcataatttttt-taatatattattcaagatatttacgctcaaaattatgcattaacat 32473872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 2799783 - 2799847
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||||||| | ||||  |||||||||||  ||||| || | |||||||||    
T  2799783 aaattttcataattttttctaatattttattcaagatatttaaactcaaagttatacattgacat 2799847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 2805949 - 2806013
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||||||| | ||||  |||||||||||  ||||| || | |||||||||    
T  2805949 aaattttcataattttttctaatattttattcaagatatttaaactcaaagttatacattgacat 2806013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 20502962 - 20502898
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgaca 65  Q
    ||||||| ||||||||||| |||| |||||   || |||||||||||||||||  ||||||||||    
T  20502962 caaatttacataattttttttaatatattacttaacatatttaagttcaaaataatgcattgaca 20502898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 19649 - 19584
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||| |||||||| |||||||||||    
T  19649 caaattttcataatttttcctaatatattattcaagatatttaagctcaaaattatgcattgacat 19584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1615689 - 1615754
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| ||||| || |||||||||||    
T  1615689 caaattttcataattttttctaatatattattcaagatatttaagctcaaagttatgcattgacat 1615754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2806084 - 2806019
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||||||||| || |||||||||||    
T  2806084 caaattttcataatttttcctaatatattattcaagatatttaagttcaaagttatgcattgacat 2806019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 20651561 - 20651626
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||||| |||||||||||| ||  ||||| ||| |||||||||||||||||||||||||||||||    
T  20651561 aaatttttataattttttctgatagattattaaaaatatttaagttcaaaattgtgcattgacata 20651626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29821200 - 29821261
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| |||||||| |||||||    
T  29821200 caaattttcataattttttctaatatattattcaagatatttaagctcaaaattatgcattg 29821261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39260502 - 39260567
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||| ||||||||||||||| ||||||  ||||||||||| ||||||||| |||||||||||    
T  39260502 caaatttttataattttttctaatatattattcaagatatttaaattcaaaattatgcattgacat 39260567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 47834056 - 47833992
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| |||| ||||||  |||||||||||| |||||||| |||||||||||    
T  47834056 aaattttcataattttttataatatattattcaagatatttaagctcaaaattatgcattgacat 47833992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30733848 - 30733781
Alignment:
Q  1 caaattttcataattttttctaatgt-attataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    |||||||||||||||||||||||| | ||||| |||||||||||| | |||||||||||||| |||||    
T  30733848 caaattttcataattttttctaatatgattattaaagatatttaattacaaaattgtgcattaacata 30733781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 6520585 - 6520647
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||| |||||||||||| ||||||  |||||||||||| |||||||| ||||||||    
T  6520585 caaattttcatgattttttctaatatattattcaagatatttaagctcaaaattatgcattga 6520647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 17492817 - 17492879
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| ||||| || ||||||||    
T  17492817 caaattttcataattttttctaatatattattcaagatatttaagctcaaagttatgcattga 17492879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 52818602 - 52818544
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcat 60  Q
    ||||||||||||||||||||||| ||||||  |||||||||||| |||||||| |||||    
T  52818602 aaattttcataattttttctaatatattattcaagatatttaagctcaaaattatgcat 52818544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45064417 - 45064478
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||||||||||| || |  ||||| ||||||||||||||| ||||||||||||||    
T  45064417 caaattttcataattttttttattagattattaaagatatttaagtttaaaattgtgcattg 45064478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 51716681 - 51716746
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||| |||| ||||||  || ||||||||| |||||||| |||||||||||    
T  51716681 caaattttcataattttttataatatattattcaaaatatttaagctcaaaattatgcattgacat 51716746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 23605814 - 23605754
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||| |||||||||||  ||||||  ||||||||||||||||||||| |||||||    
T  23605814 aaattttcattattttttctaacatattattcaagatatttaagttcaaaattatgcattg 23605754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 42862205 - 42862153
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    ||||||||||||||||||||||| |||||| |||||||||||| || ||||||    
T  42862205 aaattttcataattttttctaatatattattaaagatatttaaatttaaaatt 42862153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 44210299 - 44210361
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| ||||||||    
T  44210299 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaattatgcattga 44210361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1981294 - 1981229
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||| |||||||  ||||||  |||||||||||  |||||||| |||||||||||    
T  1981294 caaattttcataattatttctaacatattattcaagatatttaaactcaaaattatgcattgacat 1981229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8525329 - 8525276
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||||||| ||||||  |||||||||||  ||||||||    
T  8525329 caaattttcataattttttctaatatattattcaagatatttaaactcaaaatt 8525276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11260852 - 11260917
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    ||||||||||||||||||  |||| ||||||  ||||||||||||  ||||||| |||||||||||    
T  11260852 caaattttcataatttttcttaatatattattcaagatatttaagcacaaaattatgcattgacat 11260917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24505661 - 24505726
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||| ||||| || || ||||||||    
T  24505661 caaattttcataatttttcctaatatattattcaagatatttaagctcaaagttatgtattgacat 24505726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28898984 - 28898923
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| |||||||    
T  28898984 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaattatgcattg 28898923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28988307 - 28988246
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||| ||||||||||||||||||  ||||||  |||||||||||| |||||||| |||||||    
T  28988307 caaaatttcataattttttctaacatattattcaagatatttaagctcaaaattatgcattg 28988246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 37667687 - 37667626
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||| ||||||    
T  37667687 caaattttcataattttttccaatatattattcaagatatttaaactcaaaattgcgcattg 37667626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 48079961 - 48079896
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||| ||||| || | |||||||||    
T  48079961 caaattttcataatttttcctaatatattattgaagatatttaagctcaaagttatacattgacat 48079896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 31657268 - 31657208
Alignment:
Q  3 aattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||| |||||||||||  ||||||  |||||||||||| |||||||| ||||||||    
T  31657268 aattttcatgattttttctaacatattattcaagatatttaagctcaaaattatgcattga 31657208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 37588430 - 37588382
Alignment:
Q  14 ttttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| |||||| ||||||||||||| |||||||| |||||||    
T  37588430 ttttttctaatatattattaaagatatttaagctcaaaattatgcattg 37588382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 50685071 - 50685123
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    ||||||||||| ||||||||||| ||||||  || ||||||||||||||||||    
T  50685071 aaattttcatatttttttctaatatattattcaaaatatttaagttcaaaatt 50685123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 42185425 - 42185484
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    |||||||||||||||||| |||  ||||||  |||||||||||| |||||||| ||||||    
T  42185425 aaattttcataattttttataacatattatttaagatatttaagctcaaaattatgcatt 42185484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24334291 - 24334229
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||| |||||||||||  ||||||  ||||||| |||| |||||||| ||||||||    
T  24334291 caaattttcatgattttttctaacatattattcaagatatgtaagctcaaaattatgcattga 24334229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 37164166 - 37164228
Alignment:
Q  1 caaattttcataatttttt-ctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||||||||||| ||| | ||||||  |||||||||||| |||||||| |||||||    
T  37164166 caaattttcataatttttttctattatattattcaagatatttaagctcaaaattatgcattg 37164228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 39376781 - 39376719
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||  ||||||||    
T  39376781 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaatcatgcattga 39376719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 51306147 - 51306085
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||  |||||||| ||||||||    
T  51306147 caaattttcatgattttttctaacatattattcaagatatttaaactcaaaattatgcattga 51306085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1377958 - 1378019
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||  ||||||||||  ||||||  |||||||||||| |||||||| |||||||    
T  1377958 caaattttcatggttttttctaacatattattcaagatatttaagctcaaaattatgcattg 1378019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1613131 - 1613066
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||| || |||||||||||| ||||||  |||||||||||  |||||||| || ||||||||    
T  1613131 caaatttttattattttttctaatatattattcaagatatttaaactcaaaattatgtattgacat 1613066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3708403 - 3708456
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  3708403 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 3708456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10384998 - 10385051
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  10384998 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 10385051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28914518 - 28914571
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  28914518 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 28914571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40411521 - 40411468
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  40411521 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 40411468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43447315 - 43447368
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  43447315 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 43447368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 48380906 - 48380959
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  48380906 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 48380959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 55631788 - 55631735
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  55631788 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 55631735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 39171108 - 39171160
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaat 53  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  |||||||    
T  39171108 caaattttcataattttttccaatatattattcaagatatttaaactcaaaat 39171160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44022418 - 44022483
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||| ||||||||||||||| ||||||  || |||||||||||||||||| |||||||||||    
T  44022418 caaatttttataattttttctaatatattattcaatatatttaagttcaaaattatgcattgacat 44022483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 18504622 - 18504688
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||||||||||||||||||| || ||||||  |||||||||||| || ||||| ||||||||||||    
T  18504622 caaattttcataattttttctcatatattattcaagatatttaagctcgaaattatgcattgacata 18504688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7601310 - 7601245
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||| ||||| || |||||||||||    
T  7601310 caaattttcataatttttcctaatatattattcaagatatttaagctcaaagttatgcattgacat 7601245  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26436600 - 26436535
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgacat 66  Q
    |||||||||||||||||||||||| ||||||  |||||||||||  ||||| || |||||||||||    
T  26436600 caaattttcataattttttctaatatattattcaagatatttaaactcaaagttatgcattgacat 26436535  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 8924652 - 8924596
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtg 57  Q
    |||||||| |||||||||||||||  ||||| ||||||||||||| |||||||||||    
T  8924652 caaatttttataattttttctaatagattattaaagatatttaagatcaaaattgtg 8924596  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 41465229 - 41465289
Alignment:
Q  2 aaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||||||||  ||||| ||| | | ||||||||||||||||||||||    
T  41465229 aaattttcataattttttctaatagattattaaaaacacttaagttcaaaattgtgcattg 41465289  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 45001792 - 45001733
Alignment:
Q  5 ttttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattgaca 65  Q
    |||||||||||||| |||||  ||||| ||| |||||||||||||||||||||||||||||    
T  45001792 ttttcataattttt-ctaataaattattaaatatatttaagttcaaaattgtgcattgaca 45001733  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41575712 - 41575774
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| ||||||||    
T  41575712 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaattatgcattga 41575774  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5861478 - 5861417
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||| |||||| ||||| || || ||| |||||||||||||||||||| |||||    
T  5861478 caaattttcatatttttttataatgcataattaaaaatatttaagttcaaaattgtacattg 5861417  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6730016 - 6729955
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| |||||||    
T  6730016 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaattatgcattg 6729955  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25627173 - 25627234
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||||||||||| |||| ||||||  || ||||||||| |||||||| |||||||    
T  25627173 caaattttcataattttttataatatattattcaatatatttaagctcaaaattatgcattg 25627234  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 37317026 - 37317087
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| |||||||| |||||||    
T  37317026 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaattatgcattg 37317087  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38963945 - 38963998
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||||||| ||||||  |||||||||||  ||||||||    
T  38963945 caaattttcataattttttctaatatattattcaagatatttaaactcaaaatt 38963998  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45036513 - 45036574
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    |||||||||||||||||||||||| ||||||  |||||||||||  | |||||| |||||||    
T  45036513 caaattttcataattttttctaatatattatttaagatatttaaacttaaaattatgcattg 45036574  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 14802868 - 14802818
Alignment:
Q  17 tttctaatgtattataaaagatatttaagttcaaaattgtgcattgacata 67  Q
    ||||||||  ||||| |||||||||||||||||||  ||||||||||||||    
T  14802868 tttctaattgattattaaagatatttaagttcaaatatgtgcattgacata 14802818  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20682792 - 20682854
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||  |||||||| ||||||||    
T  20682792 caaattttcatgattttttctaacatattattcaagatatttaaactcaaaattatgcattga 20682854  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31975446 - 31975385
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    ||||||||||||||||||||||||  ||||| |||||||| | || |||||||||| ||||||    
T  31975446 caaattttcataattttttctaatcaattattaaagatatct-agatcaaaattgtacattga 31975385  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1749085 - 1749032
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  1749085 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 1749032  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5096398 - 5096451
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  5096398 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 5096451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6075275 - 6075336
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||||||||||||||   ||||||  || ||||||||||| |||||| |||||||    
T  6075275 caaattttcataattttttctagcatattattcaaaatatttaagtttaaaattatgcattg 6075336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11383958 - 11383905
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    ||||||||||||| |||||||||| ||||||  |||||||||||  ||||||||    
T  11383958 caaattttcataagtttttctaatatattattcaagatatttaaactcaaaatt 11383905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12209139 - 12209192
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  12209139 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 12209192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22718456 - 22718403
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||| ||||||||    
T  22718456 caaattttcatgattttttctaacatattattcaagatatttaagctcaaaatt 22718403  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37987849 - 37987796
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  37987849 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 37987796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41436982 - 41437035
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  41436982 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 41437035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 43328714 - 43328653
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattg 62  Q
    ||||||||||||||||||| |||| ||||||  || ||||||||| | |||||| |||||||    
T  43328714 caaattttcataattttttataatatattattcaaaatatttaagctaaaaattatgcattg 43328653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15177519 - 15177579
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    ||||||||||||||||||| |||| |||||   |||||||||||  |||||||| ||||||    
T  15177519 caaattttcataattttttataatatattactcaagatatttaaactcaaaattatgcatt 15177579  T

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Target: scaffold0385 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2134 - 2074
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcatt 61  Q
    |||||| |||||||||||||| || ||||||  ||||||||||||||||||||| ||||||    
T  2134 caaattctcataattttttctgatatattattcaagatatttaagttcaaaattatgcatt 2074  T

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Target: scaffold1248 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1370 - 1308
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||||||| ||||||  | |||||||||| | |||||| ||||||||    
T  1370 caaattttcataattttttctaatatattattcaggatatttaagcttaaaattatgcattga 1308  T

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Target: scaffold0952 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 943 - 1005
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaattgtgcattga 63  Q
    |||||||||||||||||||||||| ||||||  | |||||||||| | |||||| ||||||||    
T  943 caaattttcataattttttctaatatattattcaggatatttaagcttaaaattatgcattga 1005  T

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Target: scaffold0221 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5526 - 5579
Alignment:
Q  1 caaattttcataattttttctaatgtattataaaagatatttaagttcaaaatt 54  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||  ||||||||    
T  5526 caaattttcataattttttccaatatattattcaagatatttaaactcaaaatt 5579  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 43704 - 43672
Alignment:
Q  33 aaagatatttaagttcaaaattgtgcattgaca 65  Q
    ||||||||||||| |||||||||||||||||||    
T  43704 aaagatatttaagatcaaaattgtgcattgaca 43672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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