View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7776_low_1 (Length: 608)
Name: NF7776_low_1
Description: NF7776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7776_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Original strand, 49412615 - 49413203
Alignment:
| Q |
1 |
aaagaggaaattattggactgaagtaaggaaaagttagtggttcgtagtttatgaatgtatgacccttcacacaatatatcctcattccctacacattat |
100 |
Q |
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| T |
49412615 |
aaagaggaaattattggaatgaagtaaggaaaagttagtggttcgtagtttatgaatgtatgacccttcacacaatatatcctcattccctacacattat |
49412714 |
T |
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| Q |
101 |
gaagtttagctacataaatttgggggagaagatgaaattgtgaaaaaccatatagttgaagaagaatattctaggnnnnnnngtggaaaattggacgaca |
200 |
Q |
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| T |
49412715 |
gaagtttagctacataaatttgggggagaagatgaaattgtgaaaaaccatatagttgaagaagaaaattctaggaaaaaaagtggaaaattggacgaca |
49412814 |
T |
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| Q |
201 |
ggtttgtcatattagacgcattttgtcttatcacataacttaaatgatgtttat-tacgtttccgacggaaaagactaacttgaatgaacttttataaag |
299 |
Q |
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| T |
49412815 |
ggtttgtcacattagacgcattttgtcttatcacataatttaaatagtgtttatgtacgttttcgacggaaaagactaacttgaatgaacttttataaag |
49412914 |
T |
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| Q |
300 |
gaccaagcgaacacttttaaaagcaaaatgactgatttacaccacaaaataatgtaagtatcaagaaatatatttgagtttatttcattcataatctagc |
399 |
Q |
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| T |
49412915 |
gaccaagcgaacacttttaaaagcaaaatgactgatttacacctcaaaataatgtaagtatcaagaaatatatttgagtttatttcattcataatctagc |
49413014 |
T |
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| Q |
400 |
attatctacaagcgatttgagggtataaaatatgcagttcaaccacaccggttgttttgatgttatgacttaagacaactataagaatattctaactgaa |
499 |
Q |
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| T |
49413015 |
attatctacaagcgatttgagggtat--aatatgcagttcaaccacaccggttgttttgatattatgacttaagacaactataagaatattctaactgaa |
49413112 |
T |
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| Q |
500 |
aagactattaatcaattctacatgagacttctaacatttgatcaagattacccatccatagttcattttgatcaagaaacatactccttgc |
590 |
Q |
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| T |
49413113 |
aagactattaatcaattctacacgagacttctaacatttgatcaagattacccatccatagttcattttgatcaagaaacatactccttgc |
49413203 |
T |
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