View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7776_low_10 (Length: 284)
Name: NF7776_low_10
Description: NF7776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7776_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 32409711 - 32409455
Alignment:
| Q |
10 |
tgaaagtagaagcatcgcttgatgttgaaatggatctgtcacctgatgtgaaagtgcagtcatcacctatcatacaaatggagccatcaccaaagtccaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32409711 |
tgaaagtagaagcatcgcttgatgttgaaatggatctgtcacatgatgtgaaagtgtagtcatcacctatcatacaaatggagccatcaccaaagtccaa |
32409612 |
T |
|
| Q |
110 |
taaaaggatgtgtacaatccttgcaaaaagaattagggcatgtttgtgcttgaaccaacatggagataaagatttgaacaatttttgatttgacaaggtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32409611 |
taaaaggatgtgtacaatccttgcaaaaagaattagggcatgtttgtgcttgaaccaacatggagataaagatttgaacaatttttgatttgacaaggtt |
32409512 |
T |
|
| Q |
210 |
ttgtcatataaacatatttgaagtccatttcagtttgttacttttctaaggtattat |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32409511 |
ttgtcatataaacatatttgaagtccatttcagtttgtgacttttctaaggtattat |
32409455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 3259485 - 3259349
Alignment:
| Q |
64 |
tgcagtcatcacctatcatacaaatggagccatcaccaaagtccaataaaaggatgtgtacaatccttgcaaaaagaattagg-gcatgtttgtgcttga |
162 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| ||||||||||||||| ||| || | ||||| ||||||||| || | || |||||||| ||||||| |
|
|
| T |
3259485 |
tgcagtcattacctatcatggaaatggagccaccaccaaagtccaatagaagtatctttacaagatttgcaaaaaaaaatgggtgcatgtttatgcttga |
3259386 |
T |
|
| Q |
163 |
accaacatggagataaagatttgaacaatttttgatt |
199 |
Q |
| |
|
|||| ||| ||||||||| ||||||||| ||||||| |
|
|
| T |
3259385 |
accagcatagagataaaggtttgaacaacatttgatt |
3259349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 3322508 - 3322379
Alignment:
| Q |
68 |
gtcatcacctatcatacaaatggagccatcaccaaagtccaataaaaggatgtgtacaatccttgcaaaaagaattagggcatgtttgtgcttgaaccaa |
167 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| ||| || | |||| ||||||||||||| | ||||||| ||||||||||| |
|
|
| T |
3322508 |
gtcatcacctatcatggtaatggagccacaaccaaagtccaatagaagtatctttacaggatttgcaaaaagaatgggtacatgtttatgcttgaaccag |
3322409 |
T |
|
| Q |
168 |
catggagataaagatttgaacaatttttga |
197 |
Q |
| |
|
||| ||||||||| |||||||||| ||||| |
|
|
| T |
3322408 |
catagagataaaggtttgaacaatgtttga |
3322379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University