View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7776_low_12 (Length: 275)
Name: NF7776_low_12
Description: NF7776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7776_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 15808097 - 15808350
Alignment:
| Q |
18 |
acttttattggactaaaggtaaccacacaagtacttttgaattaggaggaacaacctatgaattaggaggaacgacctatacgcactgcaacttgatctt |
117 |
Q |
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| T |
15808097 |
acttttattggactaaaggtaaccacacaagtacttttgaattaggaggaacaacctatgaattaggaggaacgacctatacgcactgcaacttgatctt |
15808196 |
T |
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| Q |
118 |
gagtggccatgaagtaagagatatgaaatcagctaatatatgttttttataatttgtagtcaacagaatcatcaactgatatatttgcatcaatttcttt |
217 |
Q |
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| T |
15808197 |
gagtggccatgaagtaagagatatgaaatcagctaatatatgttttttataatttgtagtcaacagaatcatcaactgatatatttgcatcaatttcttt |
15808296 |
T |
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| Q |
218 |
gttacaaaaatgcagatatttttggaagaatttaataccacaggttctgctcgt |
271 |
Q |
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| T |
15808297 |
gttacaaaaatgcagatatttttgtaagaatttaataccagaagttttgctcgt |
15808350 |
T |
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