View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7776_low_18 (Length: 232)
Name: NF7776_low_18
Description: NF7776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7776_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 34720353 - 34720160
Alignment:
| Q |
16 |
aagaataaatagcatcatattagtcgctaaataatgaaaattgtattcatgatttctaaattaaatgacatctagtccatcaaattagctacctagcatc |
115 |
Q |
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| T |
34720353 |
aagaataaatagcatcatattagtcgctaaataatgaaaattgtattcatgatttctaaattaaatgacatctagtccatcaaattagctaccttgcatc |
34720254 |
T |
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| Q |
116 |
cgcaattgctttgatagttttctcttcttgaggactgagttcattatcatcatagtctacacttcttgtaaccttaaaatccaacaaattcata |
209 |
Q |
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| T |
34720253 |
agcaattgctttgatagttttctcttcttgaggactgagttcattatcatcatagtctacacttcttgtaaccttaaaattcaacaaattcata |
34720160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 34698032 - 34698128
Alignment:
| Q |
105 |
tacctagcatccgcaattgctttgatagttttctcttcttgaggactgagttcattatcatcatagtctacacttcttgtaaccttaaaatccaacaaat |
204 |
Q |
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| T |
34698032 |
taccttgcatcagcaattgctttgattgtcttcttttcttgaggactgacttcatta---------tctacactttttgtaaccttaaaatccaacaaat |
34698122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 34694152 - 34694193
Alignment:
| Q |
173 |
tacacttcttgtaaccttaaaatccaacaaattcatatgaat |
214 |
Q |
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| T |
34694152 |
tacactttttttaaccttaaaatccaacaaattcatatgaat |
34694193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 27013228 - 27013049
Alignment:
| Q |
16 |
aagaataaatagcatcatattagtcgctaaataatgaaaattgtattcatgatttctaaattaaatgacatctagtccatcaaattagctacctagcatc |
115 |
Q |
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| T |
27013228 |
aagaataaatagcatcatattagtccctaaataatgaaaattgtgttcatggtttctaaat-----gacatctagt-------------taccttgcatc |
27013147 |
T |
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| Q |
116 |
cgcaattgctttgatagttttctcttcttgaggactgagttcattatcatcatagtctacacttcttgtaaccttaaaatccaacaaattcatatgaat |
214 |
Q |
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| T |
27013146 |
agcaattgctttgatcgttttctcttcttgaggactgagttcattatcatcatagtctacacttcttgtaaccttaaaatccaac-aattcatatgaat |
27013049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 27064627 - 27064510
Alignment:
| Q |
99 |
attagctacctagcatccgcaattgctttgatagttttctcttcttgaggactgagttcattatcatcatagtctacacttcttgtaaccttaaaatcca |
198 |
Q |
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| T |
27064627 |
attagctaccttgcatcagcaattgctttgatcgttttctcttcttgaggactgagttcattatcgccatagtctacacttcttgtaaccttaaaatcca |
27064528 |
T |
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| Q |
199 |
acaaattcatatgaatat |
216 |
Q |
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|||||||||||||||||| |
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| T |
27064527 |
acaaattcatatgaatat |
27064510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 27032215 - 27032311
Alignment:
| Q |
105 |
tacctagcatccgcaattgctttgatagttttctcttcttgaggactgagttcattatcatcatagtctacacttcttgtaaccttaaaatccaacaaat |
204 |
Q |
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||||| ||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
27032215 |
taccttgcatcagcaattgctttgattgttttcctttcttgaggactgagttcatta---------tctacactttttgtaaccttaaaatccaacaaat |
27032305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 26995694 - 26995790
Alignment:
| Q |
105 |
tacctagcatccgcaattgctttgatagttttctcttcttgaggactgagttcattatcatcatagtctacacttcttgtaaccttaaaatccaacaaat |
204 |
Q |
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||||| ||||| |||||||||||||| || |||| |||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||| |
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| T |
26995694 |
taccttgcatcagcaattgctttgattgtcttcttttcttgaggactgacttcatta---------tctacacattttgtaaccttaaaatccaacaaat |
26995784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 26991894 - 26991935
Alignment:
| Q |
173 |
tacacttcttgtaaccttaaaatccaacaaattcatatgaat |
214 |
Q |
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| T |
26991894 |
tacactttttttaaccttaaaatccaacaaattcatatgaat |
26991935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 27072604 - 27072558
Alignment:
| Q |
117 |
gcaattgctttgatagttttctcttcttgaggactgagttcattatc |
163 |
Q |
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|||||| ||||||| || |||| |||||||||||||||||||||||| |
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| T |
27072604 |
gcaattcctttgattgtcttcttttcttgaggactgagttcattatc |
27072558 |
T |
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