View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7776_low_19 (Length: 222)
Name: NF7776_low_19
Description: NF7776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7776_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 45283033 - 45283231
Alignment:
| Q |
1 |
tccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggaggat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45283033 |
tccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggat |
45283132 |
T |
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| Q |
101 |
gtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcacc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283133 |
gtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcacc |
45283231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 45294421 - 45294619
Alignment:
| Q |
1 |
tccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggaggat |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
45294421 |
tccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggat |
45294520 |
T |
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| Q |
101 |
gtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcacc |
199 |
Q |
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| T |
45294521 |
gtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcacc |
45294619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 45303381 - 45303579
Alignment:
| Q |
1 |
tccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggaggat |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
45303381 |
tccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggat |
45303480 |
T |
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| Q |
101 |
gtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcacc |
199 |
Q |
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| T |
45303481 |
gtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcacc |
45303579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 45271259 - 45271457
Alignment:
| Q |
1 |
tccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggaggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| |
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| T |
45271259 |
tccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggat |
45271358 |
T |
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| Q |
101 |
gtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcacc |
199 |
Q |
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||| ||||||||||||||||||||||||||||| || || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271359 |
gtcagacaaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttctcacc |
45271457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 45274792 - 45274990
Alignment:
| Q |
1 |
tccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctggaggat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| |
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| T |
45274792 |
tccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctggaggat |
45274891 |
T |
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| Q |
101 |
gtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcacc |
199 |
Q |
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||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
45274892 |
gtcggacaaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctcacc |
45274990 |
T |
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