View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7776_low_21 (Length: 205)
Name: NF7776_low_21
Description: NF7776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7776_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 19809330 - 19809135
Alignment:
| Q |
1 |
acactgattttcaacaagaataaaaagccaaaacaacacaccataaatgataagatccaaaaatgcaatatggatttgataaacatataatgtaaaatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19809330 |
acactgattttcaacaagaataaaaagccaaaacaacacaccataaatgataagatccaaaaatgcaatatggatttgataaacatataatgtaaaatac |
19809231 |
T |
|
| Q |
101 |
aaaaacatagagacaaaaagagagatatcggtgactgaccagaccatatctaaattaaaacatacctgaaagtttatttgcaaaacacaggttctg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
19809230 |
aaaaacatagagacaaaaagagagatatcggtgactgaccagaccatatctaaattaaaacatacctgaaagtttatttgcaaaacccagggtctg |
19809135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 39139073 - 39138883
Alignment:
| Q |
1 |
acactgattttcaacaagaataaaaagccaaaacaacacaccataaatgataagatccaaaaatgcaatatggatttgataaacatataatgtaaaatac |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39139073 |
acactgattttcaacaagaataaaaaggcaaaacaacacacaataaatgataagatccaaaaatgcaatatggatttgataaacatataatgtaaaatac |
39138974 |
T |
|
| Q |
101 |
aaaaacatagagacaaaaagagagatatcggtgactgaccagaccatatctaaattaaaacatacctgaaagtttatttgcaaaacacagg |
191 |
Q |
| |
|
||||||| ||||||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39138973 |
caaaacattgagacaaaaggagagataccggtgactgaccaaaccatgtctaaattaaaacatacctgaaagtttatttgcaaaacccagg |
39138883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 39472583 - 39472701
Alignment:
| Q |
50 |
ataagatccaaaaatgcaatatggatttgataaacatataatgtaaaatacaaaaacatagagacaaaaagagagatatcggtgactgaccagaccatat |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||| |||| |||| ||||||| |||||||||||| ||||||| |
|
|
| T |
39472583 |
ataagatccaaaaatgcaatatggatttgataaacataca-tgtaacataccaaaa---------------agagatacaggtgactgaccaaaccatat |
39472666 |
T |
|
| Q |
150 |
ctaaattaaaacatacctgaaagtttatttgcaaaac |
186 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39472667 |
ctaaattaaa--atacctgaaagtttatttgcaaaac |
39472701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 39153384 - 39153299
Alignment:
| Q |
106 |
catagagacaaaaagagagatat--cggtgactgaccagaccatatctaaattaaaacatacctgaaagtttatttgcaaaacacagg |
191 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||| | ||| |||||||||| |||||| |||| |||||||||||||| |||| |
|
|
| T |
39153384 |
catagagacaaaaagagagagagaccgatgactgaccaaagcatgtctaaattaa--cataccagaaactttatttgcaaaacccagg |
39153299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University