View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7776_low_3 (Length: 528)
Name: NF7776_low_3
Description: NF7776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7776_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 32609462 - 32609752
Alignment:
| Q |
20 |
catagtgaaacaaccaatctcatctccctcaaattccattctatttctaattataaacgaataaaacaagtctcgaatcgtcaaaacatatatcataatc |
119 |
Q |
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| T |
32609462 |
catagtgaaacaaccaatctcatctccctcaaattccattctatttctaattataaacgaataaaacaagtctcgaatcgtcaaaacatatatcataatc |
32609561 |
T |
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| Q |
120 |
cattctacattccttgactaacagtataatcaatcgagaccaacacataactatatcaattgattccatataatagtctcacataaccaaatccataaat |
219 |
Q |
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| T |
32609562 |
cattctacattccttgactaacagtataatcaatcgagaccaacacataactatatcaatcgattccatataataatctcacataaccaaatccataaat |
32609661 |
T |
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| Q |
220 |
atttctaattataaacaaagtttcaaattaccaaaacatcatagaattcagaatccattctacattctttgactaacacagtaaaatcaag |
310 |
Q |
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| T |
32609662 |
atttctaattataaacaaagtttcaaattaccaaaacatcatagaattcagaatccattctacattctttgactaacacaataaaatcaag |
32609752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 402 - 511
Target Start/End: Original strand, 32610127 - 32610236
Alignment:
| Q |
402 |
gaagtagcaattacccttccataagcattaacgtccaatccattcaccaacaaatcaccaatatctttcttcaaaaacttctccgtcgctttcctcttcc |
501 |
Q |
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| T |
32610127 |
gaagtagcaattacccttccataagcattaacgtccaatccattcactaacaaatcaccaatatccttcttcaaaaacttctccgtcgctttcctcttcc |
32610226 |
T |
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| Q |
502 |
tccttatcac |
511 |
Q |
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| T |
32610227 |
tccttatcac |
32610236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 32609292 - 32609355
Alignment:
| Q |
47 |
ctcaaattccattctatttctaattataaacgaa--taaaacaagtctcgaatcgtcaaaacat |
108 |
Q |
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| T |
32609292 |
ctcaaattccattctatttctaattataaaccaaattaaacaaagtctcaaatcgccaaaacat |
32609355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 32609328 - 32609393
Alignment:
| Q |
231 |
taaacaaagtttcaaattaccaaaacatcat-agaattcagaatccattctacattctttgactaa |
295 |
Q |
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|||||||||| |||||| |||||||||||| | |||||| |||||||| || ||||||||||||| |
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| T |
32609328 |
taaacaaagtctcaaatcgccaaaacatcatcaaaattcataatccattgtatattctttgactaa |
32609393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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