View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7776_low_4 (Length: 474)
Name: NF7776_low_4
Description: NF7776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7776_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 152 - 463
Target Start/End: Original strand, 44637327 - 44637608
Alignment:
| Q |
152 |
tataattagggtcaacgttgtgcattgacatatatgaaagtcaaattacaatcactgagacaaagcgtataatattatacaatactccattcggaggaat |
251 |
Q |
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| T |
44637327 |
tataattaaggtcaacgttgtgcattaacatatatgaaagtcaaactacaatcactaagacaaagcgtataatattatacaatactccattcggaggaat |
44637426 |
T |
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| Q |
252 |
gaaatataaacaaaaaattaggtgacattttaatgaatatggactaattttaaccacatacatggatttttcaactatcacttttacttatatttcagtt |
351 |
Q |
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| T |
44637427 |
gaaatataaacaaaaaattaggtgac-------------------aattttaaccacatacatggatttttcaactatcacttttacttatatttcagtt |
44637507 |
T |
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| Q |
352 |
tggagggaatttgtagtatataatgatatgaggaccagggtccaggactaaaacatactcactccctcatccttagttcagatgtatcaaattttcgatt |
451 |
Q |
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| T |
44637508 |
tggagggagtttgtagcatataatgat-----------ggtccaggactaaaacattctcactccctcatccttagttcagatgcatcaaattttcgatt |
44637596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 44636830 - 44636922
Alignment:
| Q |
76 |
ctaatatataaaggtaaacaatactagtaaataaaac----tatgttcaattcgttttgatcaatattttcaaa--atatcatataattaggg |
162 |
Q |
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| T |
44636830 |
ctaatatataaaggtaaacaatactagtaaataaaactacgtacgttcaattcgttttgatcaatattttcaaaatatatcatataattaggg |
44636922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 39591258 - 39591316
Alignment:
| Q |
299 |
ttttaaccacatacatggatttttcaactatcacttttacttatatttcagtttggagg |
357 |
Q |
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| T |
39591258 |
ttttaaccacatacattgacctttcaactagcacttttgcttatatttcatttcggagg |
39591316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 44002581 - 44002630
Alignment:
| Q |
299 |
ttttaaccacatacatggatttttcaactatcacttttacttatatttca |
348 |
Q |
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| T |
44002581 |
ttttaaccacatagattgacttttcaactaccatttttacttatatttca |
44002630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 8450333 - 8450265
Alignment:
| Q |
289 |
tatggactaatttt--aaccacatacatggatttttcaactatcacttttacttatatttcagtttgga |
355 |
Q |
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| T |
8450333 |
tatggactaattttttaaccacatacattgatttttcaactaccactattgtttatatttcattttgga |
8450265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 40592661 - 40592612
Alignment:
| Q |
299 |
ttttaaccacatacatggatttttcaactatcacttttacttatatttca |
348 |
Q |
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| T |
40592661 |
ttttaaccacatacattaatttttcaactatcaattttatttatatttca |
40592612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 8001535 - 8001484
Alignment:
| Q |
297 |
aattttaaccacatacatggatttttcaactatcacttttacttatatttca |
348 |
Q |
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| T |
8001535 |
aattttgaccacatgcattgattttttaactaccacttttacttatatttca |
8001484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 35990583 - 35990632
Alignment:
| Q |
299 |
ttttaaccacatacatggatttttcaactatcacttttacttatatttca |
348 |
Q |
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| T |
35990583 |
ttttaaccacatacattgacttttcaactaccgcttttgcttatatttca |
35990632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 15808097 - 15808130
Alignment:
| Q |
6 |
acttttattggactaaaggaaaccacacaagtac |
39 |
Q |
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| T |
15808097 |
acttttattggactaaaggtaaccacacaagtac |
15808130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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