View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7776_low_5 (Length: 417)
Name: NF7776_low_5
Description: NF7776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7776_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 43164329 - 43163914
Alignment:
| Q |
1 |
cagtacaacacacacttaaaagctgatctggactcacacgggcagaatgatctctactcttcgatcgctgaatgtcatttgtgtgttgaatgacctcgaa |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43164329 |
cagtacaacacacactcaaaagctgatctggactcacacgggcagaatgatctctgctcttcgatcgctgaatgtcatttgtgtgttgaatgacctcgaa |
43164230 |
T |
|
| Q |
101 |
ttcgacatgaagatttctatccttcacaagagtgacctcaaaaacagttaatggcaacctttcagtcactcacaaatagcttgttgtctaattttcaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43164229 |
ttcgacatgaagatttctatccttcacaagagtgacctcaaaaacagttaatggcaacctttcagtcactcacaaatagccagttgtctaattttcaaac |
43164130 |
T |
|
| Q |
201 |
cctttacattttgtttttaggtttctaatgcattgactaaattatcatcaacgactattagttattttctcatgttttaaatattcttcataacagatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43164129 |
cctttacattttgtttttaggtttctaatgcattgactaaattatcatcaacgactattagttattttctcatgttttaaatattcttcataacagatat |
43164030 |
T |
|
| Q |
301 |
acatgtgtcttcataacaaattaaaacaaactaactagaccaaacatgttttgtgtttggaaacnnnnnnncatttaaagtgtctcgtgatctaaacatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43164029 |
acatgtgtcttcataacaaattaaaacaaactaactagaccaaacatgttttgtgtttggaaacaaaaaaacatttaaagtgtctcgtgatctaaacatt |
43163930 |
T |
|
| Q |
401 |
gggaatccctcaaaaa |
416 |
Q |
| |
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|||||||||||||||| |
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| T |
43163929 |
gggaatccctcaaaaa |
43163914 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 51467028 - 51466995
Alignment:
| Q |
372 |
catttaaagtgtctcgtgatctaaacattgggaa |
405 |
Q |
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| T |
51467028 |
catttaaagtgtctcgtgatctaaacatagggaa |
51466995 |
T |
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