View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7776_low_8 (Length: 321)
Name: NF7776_low_8
Description: NF7776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7776_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 1256315 - 1256611
Alignment:
| Q |
11 |
gacatcaatctaataaatatgtggtgaaagtcacattaaaaacaacataccacgagaacatctggaagcaaaggttgcagccatcttcaaaagttgcaat |
110 |
Q |
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| T |
1256315 |
gacatcaatctaataaatatgtggtgaaagtcacattaaaaacaacataccacgagaacatctggaagcaaaggttgcagccatcttcaaaagttgcaat |
1256414 |
T |
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| Q |
111 |
cttctatattccctgnnnnnnntgaagaggcaaaagacatgagattttaat-ggtacaaatgaagaataccaaaaagggaaatgcttgttcaaaatgcaa |
209 |
Q |
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| T |
1256415 |
cttctatattccctgaaaaaa-tgaagaggcaaaagacatgagattttaataggcacaaatgaagaatactaaaaagggaaatgcttgttcaaaatgcaa |
1256513 |
T |
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| Q |
210 |
atagtttgagagaatttccaaaatatatgtttgcattacagtatgtgaaaaacatgaacaaaaacttgagataatatctgttaacatatgtcaacact |
307 |
Q |
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| T |
1256514 |
atagtttgagagaatttccaaaatatatgtttgcattacagtatgtgaaaaacatgaacaaaaacttgagataatatctgttaacatatgtcaacact |
1256611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 49 - 244
Target Start/End: Original strand, 42191326 - 42191522
Alignment:
| Q |
49 |
aaaacaacataccacgagaacatctggaagcaaaggttgcagccatcttcaaaagttgcaatcttctatattccctgnnnnnnntgaagaggcaaaagac |
148 |
Q |
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| T |
42191326 |
aaaacaacataccacgagaacatctggaagcaaaggttgcagccatcttcaaaagttgcaatcttttatattccctaaaaaaaatgaagagccaaaggac |
42191425 |
T |
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| Q |
149 |
atgagattttaat-ggtacaaatgaagaataccaaaaagggaaatgcttgttcaaaatgcaaatagtttgagagaatttccaaaatatatgtttgca |
244 |
Q |
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| T |
42191426 |
atgagattttaataggcacaaatgaagaataccaaaaagggaaatgcttcttcaaaatgcaaatagtttgagagaatttccaaaatatatgtttgca |
42191522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 42191104 - 42191136
Alignment:
| Q |
11 |
gacatcaatctaataaatatgtggtgaaagtca |
43 |
Q |
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| T |
42191104 |
gacatcaatctaataaatatgtggtgaaagtca |
42191136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 42191795 - 42191827
Alignment:
| Q |
11 |
gacatcaatctaataaatatgtggtgaaagtca |
43 |
Q |
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| T |
42191795 |
gacatcaatctaataaatatgtggtgaaagtca |
42191827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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