View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_high_13 (Length: 466)
Name: NF7777_high_13
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 221 - 452
Target Start/End: Complemental strand, 2174170 - 2173939
Alignment:
| Q |
221 |
tcaaaatgcatatagtgtgacaaggaatattatctattttacccttgtgattaaatactttaatcttttctatattactattacctaacctagaacttcc |
320 |
Q |
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| T |
2174170 |
tcaaaatgcatatagtgtgacaaggaatattatctattttacccttgtgattaaatactttaatcttttctatattattattacctaacctagaacttcc |
2174071 |
T |
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| Q |
321 |
ttcatcaacattgccaaataagccaacattcaaggaacatgaaattatcatttcctcatgtattgactgtttgtttttctttcacactatttgtttcccg |
420 |
Q |
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| T |
2174070 |
ttcatcaacattgccaaataagccaacattcaaggaacatgaaattatcatttcctcatgtattgactgtttgtttttctttcacactatttgtttcccg |
2173971 |
T |
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| Q |
421 |
ttgaaatccgctaattatatgcacctattcat |
452 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2173970 |
ttgaaatccgctaattatatgcacctattcat |
2173939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 43 - 180
Target Start/End: Complemental strand, 2174301 - 2174161
Alignment:
| Q |
43 |
ttgatagttgtggacttatagttatgttacctccacatgttcatctgttcaaacgagtttttcgcatattatt----acttagacannnnnnnggatgtt |
138 |
Q |
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| T |
2174301 |
ttgatagttgtggacttatggttatgttacctccacatgttcatctgttcaaacgagtttt-cgcatattatttattacttagacatttttttggatgtt |
2174203 |
T |
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| Q |
139 |
catttttctgtagcagcagcatgtgcaacatttcaaaatgca |
180 |
Q |
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| T |
2174202 |
catttttctgtagtagcagcatgtgcaacatttcaaaatgca |
2174161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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