View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7777_high_19 (Length: 355)

Name: NF7777_high_19
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7777_high_19
NF7777_high_19
[»] chr6 (42 HSPs)
chr6 (164-339)||(26962029-26962204)
chr6 (166-296)||(27657796-27657927)
chr6 (166-240)||(26952635-26952709)
chr6 (160-281)||(26887781-26887902)
chr6 (166-243)||(28789393-28789470)
chr6 (166-244)||(26826907-26826985)
chr6 (166-256)||(27590185-27590275)
chr6 (164-293)||(27074220-27074349)
chr6 (166-241)||(26659004-26659079)
chr6 (166-241)||(26764975-26765050)
chr6 (166-285)||(26876545-26876664)
chr6 (166-240)||(27674614-27674688)
chr6 (166-296)||(27681931-27682061)
chr6 (166-243)||(28795417-28795494)
chr6 (166-285)||(25491205-25491324)
chr6 (166-240)||(25077043-25077117)
chr6 (166-296)||(27715556-27715686)
chr6 (166-237)||(31287617-31287691)
chr6 (166-240)||(26626159-26626236)
chr6 (166-240)||(26732136-26732213)
chr6 (166-237)||(26851561-26851632)
chr6 (166-256)||(26805536-26805626)
chr6 (166-238)||(27695626-27695698)
chr6 (181-236)||(25548008-25548063)
chr6 (181-236)||(25582735-25582790)
chr6 (181-236)||(26058947-26059002)
chr6 (181-236)||(26078917-26078972)
chr6 (166-240)||(26649502-26649579)
chr6 (166-240)||(26755470-26755547)
chr6 (166-240)||(27662428-27662505)
chr6 (166-239)||(27608166-27608239)
chr6 (166-285)||(26638389-26638511)
chr6 (166-285)||(26744355-26744477)
chr6 (181-236)||(25486398-25486453)
chr6 (166-236)||(28246414-28246484)
chr6 (166-198)||(27528712-27528744)
chr6 (166-240)||(26061596-26061668)
chr6 (166-240)||(26081566-26081638)
chr6 (166-236)||(25513903-25513973)
chr6 (166-236)||(28142684-28142754)
chr6 (166-195)||(27425033-27425062)
chr6 (176-236)||(28525284-28525344)
[»] scaffold0419 (1 HSPs)
scaffold0419 (166-243)||(10543-10620)
[»] scaffold0277 (2 HSPs)
scaffold0277 (166-243)||(1763-1840)
scaffold0277 (166-243)||(10729-10806)
[»] chr1 (2 HSPs)
chr1 (166-256)||(265381-265471)
chr1 (166-236)||(26139022-26139092)
[»] chr2 (1 HSPs)
chr2 (166-293)||(17990192-17990319)
[»] scaffold0349 (1 HSPs)
scaffold0349 (166-296)||(16259-16389)
[»] chr4 (7 HSPs)
chr4 (166-256)||(18696506-18696596)
chr4 (166-236)||(18652575-18652645)
chr4 (166-236)||(18676657-18676727)
chr4 (166-236)||(18686700-18686770)
chr4 (166-236)||(18721171-18721241)
chr4 (166-236)||(18728596-18728666)
chr4 (166-195)||(18076493-18076522)
[»] scaffold0038 (1 HSPs)
scaffold0038 (166-236)||(46576-46646)
[»] chr8 (1 HSPs)
chr8 (166-239)||(29270892-29270965)
[»] scaffold0019 (1 HSPs)
scaffold0019 (166-236)||(55284-55354)
[»] scaffold0003 (1 HSPs)
scaffold0003 (166-195)||(62301-62330)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 164 - 339
Target Start/End: Complemental strand, 26962204 - 26962029
Alignment:
Q  164 gtagggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaacttatct 263  Q
    |||||||||||||| ||| |||||||||||| ||| |||||| |   |||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  26962204 gtagggatctttttgcgataccagaaagaaaatgtgtctccctttctttggtgctcaaaccaatctggaatcccctcacttccgtttgggaaactaatct 26962105  T
Q  264 cggtgcatccagcatcatgtaggtcctgtttgtattacattatcaattatatatgcaatactatatatcaaatact 339  Q
     |||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  26962104 tggtgcatccagcctcatgtaggtcctgttagtattacattatcaattatatatgaaatactatatatcaaatact 26962029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 166 - 296
Target Start/End: Original strand, 27657796 - 27657927
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccc-tgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaacttatctc 264  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||  |||||||||||||||||||  || ||| || |||||  || ||    
T  27657796 agggatctttttacgaaaccagaaagaaattgtatctccccctgatttggtgctcgtaccaatctggaatcccctcttttacgtttgagaaacgaatatc 27657895  T
Q  265 ggtgcatccagcatcatgtaggtcctgtttgt 296  Q
    ||||||||||||||||| ||||| ||||||||    
T  27657896 ggtgcatccagcatcatttaggttctgtttgt 27657927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 26952709 - 26952635
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctc 240  Q
    |||||||||| |||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  26952709 agggatctttctacgaaaccagaaagaaattgtgtctcccctggtttggtgctcaaaccaatctggaatcccctc 26952635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 281
Target Start/End: Complemental strand, 26887902 - 26887781
Alignment:
Q  160 agttgtagggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaactt 259  Q
    |||| ||| ||||| |||||||||||||||||||| ||| | |||||||  |||||||||||||||||||||||||||||| ||||||| |||||||       
T  26887902 agttatagagatctctttacgaaaccagaaagaaagtgtgtgtcccctgctttggtgctcaaaccaatctggaatcccctctcttccgtttgggaaaaga 26887803  T
Q  260 atctcggtgcatccagcatcat 281  Q
    | ||| ||||||||||| ||||    
T  26887802 aactctgtgcatccagcctcat 26887781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 28789470 - 28789393
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcact 243  Q
    ||||||||||||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||||||||| |||||    
T  28789470 agggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcccatcact 28789393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 26826985 - 26826907
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcactt 244  Q
    |||||| |||||||||||||||||||||||||| ||||| |||  |||||||||||||| |||||||||||||||||||    
T  26826985 agggatttttttacgaaaccagaaagaaattgtgtctcctctgctttggtgctcaaaccgatctggaatcccctcactt 26826907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 27590185 - 27590275
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaa 256  Q
    |||||| | |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||| ||||||||  |||||| |||||||    
T  27590185 agggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccctctgttccgtttgggaaa 27590275  T

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Target: chr6; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 293
Target Start/End: Complemental strand, 27074349 - 27074220
Alignment:
Q  164 gtagggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaacttatct 263  Q
    |||||||||| ||||| |||||| ||||||||||  | |||| ||  | ||||||||||||||||||||||| |||||||||  | ||||||||| |||     
T  27074349 gtagggatctctttactaaaccaaaaagaaattgcatttcccatgcttcggtgctcaaaccaatctggaatctcctcacttctatttgggaaactaatcc 27074250  T
Q  264 cggtgcatccagcatcatgtaggtcctgtt 293  Q
     |||||||||||| |||||||| |||||||    
T  27074249 aggtgcatccagcctcatgtagttcctgtt 27074220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 26659079 - 26659004
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctca 241  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| ||||||||||| |||| ||||    
T  26659079 agggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcctctca 26659004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 26765050 - 26764975
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctca 241  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| ||||||||||| |||| ||||    
T  26765050 agggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcctctca 26764975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 285
Target Start/End: Complemental strand, 26876664 - 26876545
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaacttatctcg 265  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| |||||| |  ||||| ||||||||||||||  |||||| ||||| |   || | |    
T  26876664 agggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaatatag 26876565  T
Q  266 gtgcatccagcatcatgtag 285  Q
    ||||||||||| ||||||||    
T  26876564 gtgcatccagcctcatgtag 26876545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 27674614 - 27674688
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctc 240  Q
    |||||| | |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||| ||||||||    
T  27674614 agggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccctc 27674688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 166 - 296
Target Start/End: Complemental strand, 27682061 - 27681931
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaacttatctcg 265  Q
    |||||| | |||||||||||||||||||||| |   |||||||  ||||||||||||||||||||| |||||||| ||||| | |||||||   |||| |    
T  27682061 agggatttctttacgaaaccagaaagaaattatgggtcccctgctttggtgctcaaaccaatctggtatcccctctcttccatttgggaaataaatcttg 27681962  T
Q  266 gtgcatccagcatcatgtaggtcctgtttgt 296  Q
    |||||||| || |||||||| | ||||||||    
T  27681961 gtgcatcccgcctcatgtagtttctgtttgt 27681931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 28795494 - 28795417
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcact 243  Q
    |||||||||||||| ||||||||| |||||||| |||||||||  ||||||||| ||||||||||||||||| |||||    
T  28795494 agggatctttttacaaaaccagaaggaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcccatcact 28795417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 25491205 - 25491324
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaacttatctcg 265  Q
    |||||| | ||||| ||||||||||||||||||   |||||| | ||||||||| |||||||||||||| |||||||||  || ||| ||||  ||||||    
T  25491205 agggatttctttacaaaaccagaaagaaattgtccgtcccctaatttggtgctcgaaccaatctggaattccctcacttgtgtttggcaaacaaatctcg 25491304  T
Q  266 gtgcatccagcatcatgtag 285  Q
    ||||||||||| || |||||    
T  25491305 gtgcatccagcctcgtgtag 25491324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 25077117 - 25077043
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctc 240  Q
    |||||||||||| |||||||||||||||||||| ||||||   | ||||||||| ||||||||||||||||||||    
T  25077117 agggatctttttgcgaaaccagaaagaaattgtgtctccctccatttggtgctcgaaccaatctggaatcccctc 25077043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 296
Target Start/End: Original strand, 27715556 - 27715686
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaacttatctcg 265  Q
    |||||| | ||||||||||||||||||||||||   |||||||  ||||||||||||||||||||| ||||| ||  |||||| ||||||  | || | |    
T  27715556 agggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttgggaatttaatatag 27715655  T
Q  266 gtgcatccagcatcatgtaggtcctgtttgt 296  Q
    ||||||||||| | |||||| | ||||||||    
T  27715656 gtgcatccagcctgatgtagtttctgtttgt 27715686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 31287691 - 31287617
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattg---tttctcccctgacttggtgctcaaaccaatctggaatccc 237  Q
    |||||||||||||||||||||||||| |||||   ||| |||||||| ||||||||||||||||| |||||||||    
T  31287691 agggatctttttacgaaaccagaaagtaattgtgctttgtcccctgatttggtgctcaaaccaatttggaatccc 31287617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 26626236 - 26626159
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttc---tcccctgacttggtgctcaaaccaatctggaatcccctc 240  Q
    ||||||||||||||||||||||||||||||||| |    |||||||| ||| ||||| ||||||||||||||||||||    
T  26626236 agggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctc 26626159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 26732213 - 26732136
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttc---tcccctgacttggtgctcaaaccaatctggaatcccctc 240  Q
    ||||||||||||||||||||||||||||||||| |    |||||||| ||| ||||| ||||||||||||||||||||    
T  26732213 agggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctc 26732136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 26851632 - 26851561
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatccc 237  Q
    |||||||||||||||||||||||| |||||||| | | |||||  ||||||||| |||||||||||||||||    
T  26851632 agggatctttttacgaaaccagaaggaaattgtgttttccctgctttggtgctcgaaccaatctggaatccc 26851561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 26805626 - 26805536
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaa 256  Q
    |||||| | ||||||||||||||||||||||||   |||| ||  ||||||||||||||||||||| ||||||||  |||||| |||||||    
T  26805626 agggatttctttacgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctggtatcccctctgttccgtttgggaaa 26805536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 27695626 - 27695698
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccc 238  Q
    |||||| | |||| ||||||| ||||||||||| |||||||||  ||||||||||||||||||||| ||||||    
T  27695626 agggatttctttatgaaaccaaaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccc 27695698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 25548063 - 25548008
Alignment:
Q  181 aaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||| |||||||    
T  25548063 aaaccagaaagaaattgtctctcccctgctttggtgctcaaaccaatcaggaatcc 25548008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 25582790 - 25582735
Alignment:
Q  181 aaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||| |||||||    
T  25582790 aaaccagaaagaaattgtctctcccctgctttggtgctcaaaccaatcaggaatcc 25582735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 26059002 - 26058947
Alignment:
Q  181 aaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||| |||||||    
T  26059002 aaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatcaggaatcc 26058947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 26078972 - 26078917
Alignment:
Q  181 aaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||| |||||||    
T  26078972 aaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatcaggaatcc 26078917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 26649579 - 26649502
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccct---gacttggtgctcaaaccaatctggaatcccctc 240  Q
    |||||| |||||||||||||| ||||||||||| ||||||||   || |||||| || ||||||||||||||||||||    
T  26649579 agggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctggaatcccctc 26649502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 26755547 - 26755470
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccct---gacttggtgctcaaaccaatctggaatcccctc 240  Q
    |||||| |||||||||||||| ||||||||||| ||||||||   || |||||| || ||||||||||||||||||||    
T  26755547 agggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctggaatcccctc 26755470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 27662428 - 27662505
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattg---tttctcccctgacttggtgctcaaaccaatctggaatcccctc 240  Q
    ||||||||||||||  ||||||||||||||||   | | |||||||||||| ||||| ||||||||||||||||||||    
T  27662428 agggatctttttacataaccagaaagaaattgagttgtgtcccctgacttgatgctcgaaccaatctggaatcccctc 27662505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 27608166 - 27608239
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccct 239  Q
    |||||| | |||||||||||||||||||| |||   |||||||  ||||||||||||||||||||| |||||||    
T  27608166 agggatttctttacgaaaccagaaagaaagtgtgagtcccctgctttggtgctcaaaccaatctggtatcccct 27608239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 285
Target Start/End: Complemental strand, 26638511 - 26638389
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgt---ttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaacttatc 262  Q
    |||||||||||||||||||||||||||||||||    | |||||||  ||| ||||| ||||||||||||||| ||||  ||| |  ||| ||||  ||     
T  26638511 agggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttctggttggaaaacgaata 26638412  T
Q  263 tcggtgcatccagcatcatgtag 285  Q
    || ||||||||||| ||||||||    
T  26638411 tcagtgcatccagcttcatgtag 26638389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 285
Target Start/End: Complemental strand, 26744477 - 26744355
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgt---ttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaacttatc 262  Q
    |||||||||||||||||||||||||||||||||    | |||||||  ||| ||||| ||||||||||||||| ||||  ||| |  ||| ||||  ||     
T  26744477 agggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttctggttggaaaacgaata 26744378  T
Q  263 tcggtgcatccagcatcatgtag 285  Q
    || ||||||||||| ||||||||    
T  26744377 tcagtgcatccagcttcatgtag 26744355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 25486453 - 25486398
Alignment:
Q  181 aaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    ||||||||||||||||||  ||||||||  |||||||||||||||||| |||||||    
T  25486453 aaaccagaaagaaattgtgcctcccctgctttggtgctcaaaccaatcaggaatcc 25486398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 28246484 - 28246414
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    ||||| ||| ||||||||||| ||||||||||| | |||| ||  |||||| |||||||||||||||||||    
T  28246484 agggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 28246414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 27528712 - 27528744
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgt 198  Q
    |||||||||||||||||||||||||||||||||    
T  27528712 agggatctttttacgaaaccagaaagaaattgt 27528744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 26061668 - 26061596
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctc 240  Q
    |||||| | |||||||||||||||| ||||||| ||  || ||| ||||||||  ||||||||||||||||||||    
T  26061668 agggatttatttacgaaaccagaaaaaaattgtgtc--ccgtgatttggtgctttaaccaatctggaatcccctc 26061596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 26081638 - 26081566
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctc 240  Q
    |||||| | |||||||||||||||| ||||||| ||  || ||| ||||||||  ||||||||||||||||||||    
T  26081638 agggatttatttacgaaaccagaaaaaaattgtgtc--ccgtgatttggtgctttaaccaatctggaatcccctc 26081566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 25513973 - 25513903
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    |||||| | |||| || ||||||||| ||||||  ||||||||  |||||||||||||||||| |||||||    
T  25513973 agggatttctttatgataccagaaagcaattgtgactcccctgctttggtgctcaaaccaatcaggaatcc 25513903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 28142754 - 28142684
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    ||||| ||||| |||||||||||||| ||||| |  |||| ||  ||||||||||||||| ||||||||||    
T  28142754 agggaacttttcacgaaaccagaaagtaattgatggtcccttgctttggtgctcaaaccactctggaatcc 28142684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 195
Target Start/End: Original strand, 27425033 - 27425062
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaat 195  Q
    ||||||||||||||||||||||||||||||    
T  27425033 agggatctttttacgaaaccagaaagaaat 27425062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 28525344 - 28525284
Alignment:
Q  176 ttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    ||||||||||| ||||||||||| | |||| ||  |||||| |||||||| ||||||||||    
T  28525344 ttacgaaaccaaaaagaaattgtatgtcccatgttttggtgatcaaaccactctggaatcc 28525284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 10620 - 10543
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcact 243  Q
    ||||||||||||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||||||||| |||||    
T  10620 agggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcccatcact 10543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 1763 - 1840
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcact 243  Q
    ||||||||||||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||||||||| |||||    
T  1763 agggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcccatcact 1840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 10729 - 10806
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcact 243  Q
    ||||||||||||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||||||||| |||||    
T  10729 agggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcccatcact 10806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 265381 - 265471
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaa 256  Q
    ||||||||||||||||||||||||||||||||| | |||| ||  ||||||||||||||||||||| ||||||||  |||||| |||||||    
T  265381 agggatctttttacgaaaccagaaagaaattgtgtttcccttgctttggtgctcaaaccaatctggtatcccctctgttccgtttgggaaa 265471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 26139092 - 26139022
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    |||||| ||||||| |||||||||||||||||| |  |||| |  ||||||||| ||||||||||||||||    
T  26139092 agggatttttttacaaaaccagaaagaaattgtctgccccccggattggtgctcgaaccaatctggaatcc 26139022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 293
Target Start/End: Original strand, 17990192 - 17990319
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaacttatctcg 265  Q
    |||||| | |||||||||||||||||||||||| |  ||||||  ||||||||||||||||||||||||||| ||  | |||   |||||||  |||||     
T  17990192 agggatttctttacgaaaccagaaagaaattgtgtgccccctgctttggtgctcaaaccaatctggaatcccttctgtcccggtcgggaaacaaatctct 17990291  T
Q  266 gtgcatccagcatcatgtaggtcctgtt 293  Q
    ||||||||||| |||||||||| |||||    
T  17990292 gtgcatccagcttcatgtaggttctgtt 17990319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 296
Target Start/End: Complemental strand, 16389 - 16259
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaacttatctcg 265  Q
    |||||| | ||||||||||||||||||||||||   |||||||  ||||||||||||||||||||| ||||| ||  |||||| ||||||  | || | |    
T  16389 agggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttgggaatttaatatag 16290  T
Q  266 gtgcatccagcatcatgtaggtcctgtttgt 296  Q
    ||||||||||| | |||||| | ||||||||    
T  16289 gtgcatccagcctgatgtagtttctgtttgt 16259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 18696506 - 18696596
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccctcacttccgtgtgggaaa 256  Q
    ||||||||||||||| |||||||||||||||| ||  ||||||  ||| ||||| ||||||||||||||||||||  |||||| |||||||    
T  18696506 agggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcccctctgttccgtttgggaaa 18696596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 18652575 - 18652645
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    ||||||||||||||| |||||||||||||||| ||  ||||||  ||| ||||| ||||||||||||||||    
T  18652575 agggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18652645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 18676657 - 18676727
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    ||||||||||||||| |||||||||||||||| ||  ||||||  ||| ||||| ||||||||||||||||    
T  18676657 agggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 18686700 - 18686770
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    ||||||||||||||  |||||||||||||||| ||  ||||||  ||| ||||| ||||||||||||||||    
T  18686700 agggatctttttacagaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18686770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 18721171 - 18721241
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    ||||||||||||||  ||||||||||||||||  |  ||||||  ||||||||| ||||||||||||||||    
T  18721171 agggatctttttacagaaccagaaagaaattgaatgacccctgctttggtgctcgaaccaatctggaatcc 18721241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 18728596 - 18728666
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    ||||||||||||||  ||||||||||||||||  |  ||||||  ||| ||||| ||||||||||||||||    
T  18728596 agggatctttttacagaaccagaaagaaattgaatgacccctgctttgatgctcgaaccaatctggaatcc 18728666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 195
Target Start/End: Complemental strand, 18076522 - 18076493
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaat 195  Q
    ||||||||||||||||||||||||||||||    
T  18076522 agggatctttttacgaaaccagaaagaaat 18076493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 46646 - 46576
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    ||||| ||| ||||||||||| ||||||||||| | |||| ||  |||||| |||||||||||||||||||    
T  46646 agggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 46576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 29270892 - 29270965
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcccct 239  Q
    |||||| | ||||||||||||||||||||||||   |||||||  |||||| || ||||||||||| |||||||    
T  29270892 agggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgttcgaaccaatctggtatcccct 29270965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 55284 - 55354
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaattgtttctcccctgacttggtgctcaaaccaatctggaatcc 236  Q
    ||||| ||| ||||||||||| |||||||| || | |||| ||  ||||||||||||||| ||||||||||    
T  55284 agggagcttgttacgaaaccaaaaagaaatcgtatgtcccatgttttggtgctcaaaccactctggaatcc 55354  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 195
Target Start/End: Complemental strand, 62330 - 62301
Alignment:
Q  166 agggatctttttacgaaaccagaaagaaat 195  Q
    ||||||||||||||||||||||||||||||    
T  62330 agggatctttttacgaaaccagaaagaaat 62301  T

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