View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_high_20 (Length: 338)
Name: NF7777_high_20
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_high_20 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: scaffold0103 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 5 - 322
Target Start/End: Original strand, 4389 - 4709
Alignment:
| Q |
5 |
gatcaagaaaaaacgtcgccttagacaaacgctagcatcgaagacgcttgaaaaatgtccca-ttttttaggaaacttctacccacattcaattgttggt |
103 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4389 |
gatcaagaaaaaacgtcgccttagacaaacgctcgcatcgaagacgcttgaaaaatgtcccatttttttaggaaacttctacccacattcaattgttggt |
4488 |
T |
|
| Q |
104 |
ggaaaagataaatgttgaggtgata-taattatacacgtcatggccaaataatgacaaagagtgcttatgcatgaagtggctgtttcatgct-nnnnnnn |
201 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4489 |
ggaaaagataaatgttgaggtgatattaattatacacgtcatggccaaataatgacaaagagtgcttatgcatgaagtggttgtttcatgctaaaaaaaa |
4588 |
T |
|
| Q |
202 |
tcatcaaataagagtccaatcccataaataattttaggatggttatgcgataaagaatgtaattgactgataatccccatctaatcttcaactctttctt |
301 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| |||||| |
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| T |
4589 |
tcatcaaataagagtccaatcccataagtaattttaggatggttatgcgataaagaatgtaattgactgataatacccgtctaatcatcaactatttctt |
4688 |
T |
|
| Q |
302 |
agtttcgcatgagagtacatt |
322 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4689 |
agtttcgcatgagagtacatt |
4709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 5 - 322
Target Start/End: Complemental strand, 2635620 - 2635300
Alignment:
| Q |
5 |
gatcaagaaaaaacgtcgccttagacaaacgctagcatcgaagacgcttgaaaaatgtcccatt-ttttaggaaacttctacccacattcaattgttggt |
103 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2635620 |
gatcaagaaaaaacgtcgccttagacaaacgctcgcatcgaagacgcttgaaaaatgtcccatttttttaggaaacttctacccacattcaattgttggt |
2635521 |
T |
|
| Q |
104 |
ggaaaagataaatgttgaggtgata-taattatacacgtcatggccaaataatgacaaagagtgcttatgcatgaagtggctgtttcatgct-nnnnnnn |
201 |
Q |
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| T |
2635520 |
ggaaaagataaatgttgaggtgatattaattatacacgtcatggccaaataatgacaaagagtgcttatgcatgaagtggttgtttcatgctaaaaaaaa |
2635421 |
T |
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| Q |
202 |
tcatcaaataagagtccaatcccataaataattttaggatggttatgcgataaagaatgtaattgactgataatccccatctaatcttcaactctttctt |
301 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| |||||| |
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| T |
2635420 |
tcatcaaataagagtccaatcccataagtaattttaggatggttatgcgataaagaatgtaattgactgataatacccgtctaatcatcaactatttctt |
2635321 |
T |
|
| Q |
302 |
agtttcgcatgagagtacatt |
322 |
Q |
| |
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||||||||||||||||||||| |
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| T |
2635320 |
agtttcgcatgagagtacatt |
2635300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 322
Target Start/End: Complemental strand, 2566657 - 2566512
Alignment:
| Q |
176 |
gaagtggctgtttcatgctnnnnnnntcatcaaataagagtccaatcccataaataattttaggatggttatgcgataaagaatgtaattgactgataat |
275 |
Q |
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||||||| ||||||||||| ||||||||||||||| |||||| |||| || |||||||||||| | ||||||| |||||| ||||||| | ||| |
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| T |
2566657 |
gaagtggttgtttcatgctaacaaaatcatcaaataagagttcaatccaataagtacttttaggatggtcacgcgataa-gaatgttattgactaacaat |
2566559 |
T |
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| Q |
276 |
ccccatctaatcttcaactctttcttagtttcgcatgagagtacatt |
322 |
Q |
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| T |
2566558 |
ccccatctcctcttaaactatttcttagtttcacatgagtgtacatt |
2566512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 2593553 - 2593429
Alignment:
| Q |
6 |
atcaagaaaaaacgtcgccttagacaaacgctagcatcgaagacgcttgaaaaatgtcccat-tttttaggaaacttctacccacattcaattgttggtg |
104 |
Q |
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|||||||| ||||||||| |||| ||||||| ||||||||||| ||||||||| |||| | ||| |||| ||||| ||||| ||||| ||||||||| |
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| T |
2593553 |
atcaagaagaaacgtcgcattaggaaaacgcttgcatcgaagacacttgaaaaacgtcctttctttgtaggtaactttaacccatattcagttgttggtg |
2593454 |
T |
|
| Q |
105 |
gaaaagataaatgttgaggtgatat |
129 |
Q |
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|||| ||||||| |||||||||||| |
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| T |
2593453 |
gaaaggataaatattgaggtgatat |
2593429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 322
Target Start/End: Original strand, 2671302 - 2671405
Alignment:
| Q |
218 |
caatcccataaataattttaggatggttatgcgataaagaatgtaattgactgataatccccatctaatcttcaactctttcttagtttcgcatgagagt |
317 |
Q |
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|||||| |||| || ||||||||| || ||| ||| | |||||| |||||||||||| | ||||||| ||||||| |||||||||||||| |||||| || |
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| T |
2671302 |
caatccaataagtacttttaggattgtcatgtgatta-gaatgttattgactgataaacaccatctactcttcaaatctttcttagtttcacatgagtgt |
2671400 |
T |
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| Q |
318 |
acatt |
322 |
Q |
| |
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||||| |
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|
| T |
2671401 |
acatt |
2671405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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