View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_high_21 (Length: 333)
Name: NF7777_high_21
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 39194243 - 39194559
Alignment:
| Q |
1 |
aaaattgtggttgagggaaaaccttactaaagattgtttgacaacttcctaaatatttactgtaggttaaattagtggatactttacaacaataacatga |
100 |
Q |
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| T |
39194243 |
aaaattgtggttgagggaaaaccttactaaagattgtttgacaacttcctaaatatttactgtaggttaaattagtggatactttacaacaataacatga |
39194342 |
T |
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| Q |
101 |
ttattannnnnnnnn--acagaaaacaataacat--gattataagaaagtatgctcatgtaaaagaattaatttctatctccaacacatacacacacatc |
196 |
Q |
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| T |
39194343 |
ttattattagtttttttacagacaacaataacatatgattataagaaagtatgctcatgtaaaagaattaatttctatctccaacacatacacacacatc |
39194442 |
T |
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| Q |
197 |
cacataacatgaaagcaataccactgttatgaattttgaggagggttttaattagagaaaggtcttttcatcatgtggtacgatatttttagaaaatttc |
296 |
Q |
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| T |
39194443 |
cacatgacatgaaagcaataccactgttatgaattttgaggagggttttaattagagaaaggtcttttcatcatgtggtacgatatttttagaaaatttc |
39194542 |
T |
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| Q |
297 |
ggaaaattaggaagact |
313 |
Q |
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|||||||||||| |||| |
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| T |
39194543 |
ggaaaattaggacgact |
39194559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 164 - 286
Target Start/End: Original strand, 39099176 - 39099300
Alignment:
| Q |
164 |
ttaatttctatctccaacacatacacacacat-ccacataacatgaaagcaataccactgttatgaattttgagga-gggttttaattagagaaaggtct |
261 |
Q |
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||||||| ||||||||||||||||||||||| |||||| | |||||||||| | ||||||||||||| ||||||| ||||| ||||||||| || | || |
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| T |
39099176 |
ttaatttacatctccaacacatacacacacatcccacatgatatgaaagcaacatcactgttatgaatattgaggaggggttataattagagcaaagcct |
39099275 |
T |
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| Q |
262 |
tttcatcatgtggtacgatattttt |
286 |
Q |
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||||||||||||||| |||| |||| |
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| T |
39099276 |
tttcatcatgtggtaagatagtttt |
39099300 |
T |
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