View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_high_23 (Length: 318)
Name: NF7777_high_23
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 38229583 - 38229868
Alignment:
| Q |
18 |
agaagaacccctaggcagtgaagctttacacacataaacaacagaaacagttcatcaaacttttcattcactttataaacttatagtaacattttatttt |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38229583 |
agaagaacccctaggcagtgaagctttacagacataaacaacagaaacagttcatcaaacttttcattcactttataaacttatagtaacattttatttt |
38229682 |
T |
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| Q |
118 |
atagaggaattcgactatgtgcaaagcttaacaagtaacttctaatcaatgcatgcacaaaatcaattaatcactgatttcaggtataatctagcattta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38229683 |
atagaggaattcgactatgtgcaaagcttaacaagtaactgctaatcaatgcatgcacaaaatcaattaatcactgatttcagatataatctagcattta |
38229782 |
T |
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| Q |
218 |
gcaattgcaattaagcaatcaactcgtagaatttaagatcggaaactgaaaatgaaattaccgagtgtaactgacgcgaactccaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38229783 |
gcaattgcaattaagcaatcaactcgtagaatttaagatcggaaactgaaaatgaaattaccgagtgtaactgacgcgaactccaa |
38229868 |
T |
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