View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_high_24 (Length: 317)
Name: NF7777_high_24
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 42 - 269
Target Start/End: Complemental strand, 47862239 - 47862012
Alignment:
| Q |
42 |
cacacacgcacacacataaatgtatgatactgtaatttattagctgaattccctgaaatttaaatgtaagtctacaggtatttcaatttgatagggttgt |
141 |
Q |
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| T |
47862239 |
cacacacacacacacataaatgtatgatactgtaatttattagctgaattccctgaaatttaaatgtaagtctacaggtatttcaatttgatagggttgt |
47862140 |
T |
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| Q |
142 |
gaaggaaaccctatggagaaaaagtgaatgagatacaagccatggcatgtatttgaagtcccacttgcatccatatatcacaggaggagtaggtgttatt |
241 |
Q |
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| T |
47862139 |
gaacgaaaccctatggagaaaaagtgaatgagatacaagccatggcatgtatttgaagtcccacttgcatccatatatcacaggaggaataggtgttatt |
47862040 |
T |
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| Q |
242 |
aatcagtttactcaaataagttgttgat |
269 |
Q |
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| T |
47862039 |
aatcagttcactcaaataagttgttgat |
47862012 |
T |
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