View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_high_25 (Length: 312)
Name: NF7777_high_25
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 43178126 - 43177838
Alignment:
| Q |
1 |
aaaagtttggagctgatctaatacatcttttgcatatgactttagtacttcaaaataatgtatgcatatgataacagtagggttagcaatctaggcctct |
100 |
Q |
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| T |
43178126 |
aaaaatttggagctgatctaatacatcttttgcatatgactttagtacttcaaaataatgtatgcatatgataacagtagtgttagcaatctaggcctct |
43178027 |
T |
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| Q |
101 |
gtatggtcaagaaattatcgtatgtacattatttgagatattgtgttatatatatgaagttcaaaattattttgaaggccaagtttatcatatgggcact |
200 |
Q |
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| T |
43178026 |
gtatggtcaagaaattattgtatgtacattatttgagatattatgttatatatatgaagttcaaaattattttgaaggccaagtttatcatatgggcact |
43177927 |
T |
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| Q |
201 |
gtggcac-tgagctgaatcatggggtagcaattgtggggtatggagaaattcgagatggaagaaaatgtgcgtttccatttgattgttt |
288 |
Q |
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| T |
43177926 |
gtggcacatgagctgaatcatggggtagcaattgtggggtatggagaaactcgagatggaagaaaatgtgcgtttccatttgattgttt |
43177838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 43172061 - 43171870
Alignment:
| Q |
6 |
tttggagctgatctaatacatcttttgcatatgactttagtacttcaaaataatgtatgcatatgata-----acagtagggttagcaatctaggcctct |
100 |
Q |
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| T |
43172061 |
tttggagctgatctaatacatcttttgaatatgactttagtgcttcaaaataatgtatgcatatgatatgataacaatagtgttagcaatctaggccact |
43171962 |
T |
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| Q |
101 |
gtat----ggtcaagaaattatcgtatgtacattatttgagatattgtgttatatatatgaagttcaaaattattttgaaggccaagtttat |
188 |
Q |
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| T |
43171961 |
gtatatatggtcaagaaattatcgtatgtacatgatttgagatatcgtgttatatatatgaagttcaaaattattttgaaggccaagtttat |
43171870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 43180487 - 43180418
Alignment:
| Q |
197 |
cactgtggcactgagctgaatcatggggtagcaattgtggggtatggagaaattcgagatggaagaaaat |
266 |
Q |
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| T |
43180487 |
cactgtggtactgagctgaatcatggggtagcaattgtggggtatggagcaactcaagatggaacaaaat |
43180418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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