View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_high_29 (Length: 270)
Name: NF7777_high_29
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 2460824 - 2461037
Alignment:
| Q |
17 |
gttctgatccgtttatttggtctccttgctgatgcnnnnnnnagtcagcccaagcaagaaacaccgacatttaattaacactaacaacatcgccaccaac |
116 |
Q |
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| T |
2460824 |
gttctgatccgtttatttggtctccttgctgatgctttttttagtcagcccaagcaagaaacactgacatttaattaacactaacaacatcgccaccaac |
2460923 |
T |
|
| Q |
117 |
ataccgagaatacactaacaactcccctccccttaaaattgaaaacttgacagtatcctaagctgtgaaaacccatatcagacaaaaggctaattgacac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2460924 |
ataccgagaatacactaacaactcccctccccttaaaattgaaaacttgacagtatcctaagctgtgaaaacccatatcagacaaaaggctaattgacac |
2461023 |
T |
|
| Q |
217 |
aaccaacttccaac |
230 |
Q |
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|||||||||||||| |
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| T |
2461024 |
aaccaacttccaac |
2461037 |
T |
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