View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7777_high_32 (Length: 255)
Name: NF7777_high_32
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_high_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 22839683 - 22839905
Alignment:
| Q |
18 |
aataacacctcctaaagaaatccttcactttattaaaatggaaccttgatgacttaattgttatattttgtgacaggtaaccgaggacccggacgaaccc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22839683 |
aataacacctcctaaagaaatccttcactttattaaaatggaaccttgatgacttaattgttatattttgtgacaggtaaccgaggacccggacgaaccc |
22839782 |
T |
|
| Q |
118 |
cacttgactggaccacaagactaaagatagcaacccaaacagcacaaggtatagcattcatccacaacaataatctcacccatggtaacatcaaatccac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22839783 |
cacttgactggaccacaagactaaagatagcaacccaaacagcaaaaggtatagcattcatccacaacaataatctcacccatggtaacatcaaatccac |
22839882 |
T |
|
| Q |
218 |
caacatcctcatcaacgtctctg |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22839883 |
caacatcctcatcaacgtctctg |
22839905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University