View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_high_38 (Length: 237)
Name: NF7777_high_38
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 39272680 - 39272883
Alignment:
| Q |
16 |
atgaatttacacgttcagtagtggcaatatcagtctctgccacagctggtggtgttatagcctcctctagcacagttttgaatgctacatgacccttctt |
115 |
Q |
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| T |
39272680 |
atgaatttacacgttcagtagtggcaatatcagtctctgctacagctggtggtgttataggctcctctagcacagttttgaatgctacatgacccttctt |
39272779 |
T |
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| Q |
116 |
atgatttcgtggacgatcatagcgtttccgaagcataggctcagttacttcatggacttggtaattgtaggagttggaaggacaccaaccgcgatatatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39272780 |
atgatttcgtggacgatcatagcgtttccgaagcataggctcagttacttcatggacttggtaattgtaggagttggaaggacaccaaccgcgatatatg |
39272879 |
T |
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| Q |
216 |
atgt |
219 |
Q |
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|||| |
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| T |
39272880 |
atgt |
39272883 |
T |
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