View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7777_high_41 (Length: 220)
Name: NF7777_high_41
Description: NF7777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7777_high_41 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 41285186 - 41285004
Alignment:
| Q |
25 |
taatcactcacacttaaatccaacaatatttctctcaaggagtcttctacatcatatatttgatttaaacatcatgacaacacttgttgagatttagggg |
124 |
Q |
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| T |
41285186 |
taatcactcacacttaaatccaataatatttctttcaaggagtcttctacatcatatatttgatttaaacatcatgacaacacttgttgagatttagggg |
41285087 |
T |
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| Q |
125 |
gagcgtcgagagcaacaataaattaaacatttaggaggcacatacaagttacacggaacaccacatatttacatacttcatct |
207 |
Q |
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| T |
41285086 |
gagcgctgagagcaacaataaattaaacatttaggaggcacatacaagttacacggaataccacatctttacatacttcatct |
41285004 |
T |
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Target: scaffold0160 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 27589 - 27626
Alignment:
| Q |
24 |
ataatcactcacacttaaatccaacaatatttctctca |
61 |
Q |
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| T |
27589 |
ataatcactcacacttaaacccaacaatattgctctca |
27626 |
T |
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